RNA id: TU1933725



Basic Information


Item Value
RNA id TU1933725
length 331
lncRNA type antisense_over
GC content 0.50
exon number 1
gene id G1690652
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36709742 ~ 36710072 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaatctgtcgttctgcccctgaacaaggcagttaacccactgttcctaggccgtcattgtaaataagaatttgttcttaactgacttgcctagttaaatgaaggtgaatAAATACTCACAGTGAGGGCTCTCCTTGCCGCCGGCCTTCAGCAGTAGTTTGGCTATGGGTGTGTTGTTGGTCATGACGGCCACGTCTAGCGGTGTTAACCCTTGGCTGTTGGGCGTGTTGAGGTCCAGCTCCTCAGCTGTGTATTGGTAGAGAAGGATCTGGACGGCATCTACATCCTGCTGCTCCACCGCCTCAAACAGACACTCACTACCCTGCATGTTc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1933715 lncRNA downstream 13987 36695297 ~ 36695755 (-) True G1690643
TU1933710 lncRNA downstream 24546 36681673 ~ 36685196 (-) False G1690638
TU1933709 lncRNA downstream 25528 36681673 ~ 36684214 (-) False G1690638
TU1933708 lncRNA downstream 26462 36682750 ~ 36683280 (-) True G1690638
TU1933703 lncRNA downstream 33803 36675124 ~ 36675939 (-) True G1690634
TU1933732 lncRNA upstream 20594 36730666 ~ 36730867 (-) True G1690658
TU1933733 lncRNA upstream 21596 36731668 ~ 36731920 (-) True G1690659
TU1933739 lncRNA upstream 30380 36740452 ~ 36740706 (-) True G1690665
TU1933740 lncRNA upstream 31514 36741586 ~ 36741923 (-) True G1690666
TU1933741 lncRNA upstream 33867 36743939 ~ 36744231 (-) True G1690667
XM_021576579.2 mRNA downstream 116978 36583534 ~ 36592764 (-) True LOC110499436
XM_036956292.1 mRNA downstream 322070 36344254 ~ 36387672 (-) False LOC110499433
XM_036956293.1 mRNA downstream 322070 36344254 ~ 36387672 (-) True LOC110499433
XM_036956291.1 mRNA downstream 322073 36344254 ~ 36387669 (-) False LOC110499433
XM_036956287.1 mRNA downstream 373290 36259840 ~ 36336452 (-) False LOC110499540
XM_021576581.2 mRNA upstream 181774 36891846 ~ 36896982 (-) False LOC110499438
XM_021576582.2 mRNA upstream 210106 36920178 ~ 36935086 (-) True LOC110499441
XR_005038406.1 mRNA upstream 236194 36946266 ~ 36946381 (-) True LOC118942469
XM_036956298.1 mRNA upstream 345881 37055953 ~ 37197139 (-) False LOC110499443
XM_036956299.1 mRNA upstream 367972 37078044 ~ 37197139 (-) False LOC110499443
TU1933722 other downstream 6301 36702546 ~ 36703441 (-) True G1690649
TU1933425 other downstream 289142 36419716 ~ 36420600 (-) True G1690367
TU1932968 other downstream 584344 36120507 ~ 36125398 (-) False LOC110499427
TU1932966 other downstream 584344 36120632 ~ 36125398 (-) False LOC110499427
TU1932967 other downstream 584344 36120632 ~ 36125398 (-) True LOC110499427
TU1933771 other upstream 99627 36809699 ~ 36810143 (-) True G1690696
TU1933942 other upstream 183475 36893547 ~ 36896206 (-) True LOC110499438
TU1934589 other upstream 528755 37238827 ~ 37239310 (-) True G1691432
TU1935552 other upstream 1772823 38482895 ~ 38485362 (-) True G1692288
TU1935564 other upstream 1779478 38489550 ~ 38492040 (-) True oxld1

Expression Profile