RNA id: TCONS_00004767


Basic Information

Item Value
RNA id TCONS_00004767
length 912
RNA type transcribed_unprocessed_pseudogene
GC content 0.56
exon number 6
gene id XLOC_002562
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6611075 ~ 6639167 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACCGCTGAGCTTCCTGGATATTTTCTCCTCTGCCTTCACGTTTGACTgattctgcatccacagaccagataaacagcaagaggaaaaggcaAAGCAGCAGCCAGCAAACACCGTCCACCTCTTCCCGGAGACCGGCCCAAtgctctcgcagagacttgtacctgaagggcccgttgctggggcgaggtggattcggctctgtgtttgctggggtCCACAGGTCggatggactgccaGTGGACATCAAGTACGTGTCGAATGACCCCCGAGAGactgaaagacggtcagggtcggctgccgctggaggtggcattAAAGACCCACATCACTTCAGCTCTtgcctgccccagtgtcctgcagctgctggactggtttgaccgtcccagacgGTTCGTCTTGATCCTGGAGCGTCCGGCTCCTTGCCAAAATCTCCAGGGCTTCTGTGAGAACGGCTGTCTGGACGAGCGTCTGGCTAAGgaagtgctggtgcagctgatcgTGGCACTGAAACACTTCGAGAACCACGGCATTCTGCACCGGGACATCAAGCCAGAGAACCTACTGATCTtcacagagtcccaggacatcaagctgctggacttcagctgtggagatctgctgaagcgctcggcctacaaatactttgcaggcactcctgcatTCGCTCCTCCTGAGTGGTTTAGCAGACATCGCTACAATGCCACTCCAGCTACAGTCAggtcagtaggagtgacgctcTACAAAATCCTGTGTGACTGTTTCCCCTTCAGAGGCACATagagggtcacgtccagaagcagactgacctttcctaggagcttgtcaacagagtgccgtcagctgattcgctggtgtctcagtgcagcgCCGGCTGATCGGTCAAGTTTAGATGATCTTGAGCgccatccct

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000148913

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005993 lncRNA downstream 26665 6610157 ~ 6611065 (-) True XLOC_002561
TCONS_00004764 lncRNA downstream 60265 6572938 ~ 6577465 (-) True XLOC_002560
TCONS_00005992 lncRNA downstream 227933 6389269 ~ 6409797 (-) True XLOC_002556
TCONS_00005991 lncRNA downstream 599984 6036881 ~ 6037746 (-) True XLOC_002555
TCONS_00005990 lncRNA downstream 782605 5854634 ~ 5855125 (-) True XLOC_002552
TCONS_00005994 lncRNA upstream 54347 6693514 ~ 6695332 (-) False XLOC_002565
TCONS_00004778 lncRNA upstream 147341 6786508 ~ 6831282 (-) True XLOC_002568
TCONS_00005995 lncRNA upstream 411158 7050325 ~ 7061537 (-) True XLOC_002571
TCONS_00005996 lncRNA upstream 599077 7238244 ~ 7253898 (-) True XLOC_002572
TCONS_00004792 lncRNA upstream 984921 7624088 ~ 7636323 (-) True XLOC_002576
TCONS_00004762 mRNA downstream 48937 6521376 ~ 6588793 (-) False XLOC_002560
TCONS_00004763 mRNA downstream 50664 6522567 ~ 6587066 (-) False XLOC_002560
TCONS_00004761 mRNA downstream 143660 6473092 ~ 6494070 (-) True XLOC_002559
TCONS_00004758 mRNA downstream 183344 6417356 ~ 6454386 (-) False XLOC_002557
TCONS_00004757 mRNA downstream 210368 6417356 ~ 6427362 (-) False XLOC_002557
TCONS_00004772 mRNA upstream 125942 6765109 ~ 6775271 (-) True XLOC_002567
TCONS_00004773 mRNA upstream 141956 6781123 ~ 6867282 (-) False XLOC_002568
TCONS_00004774 mRNA upstream 143340 6782507 ~ 6867282 (-) False XLOC_002568
TCONS_00004779 mRNA upstream 328126 6967293 ~ 6976645 (-) True XLOC_002569
TCONS_00004781 mRNA upstream 644954 7284121 ~ 7386475 (-) False XLOC_002573
TCONS_00004766 other downstream 14326 6622569 ~ 6623404 (-) False XLOC_002562
TCONS_00004760 other downstream 164898 6472706 ~ 6472832 (-) True XLOC_002558
TCONS_00004759 other downstream 206442 6417705 ~ 6431288 (-) True XLOC_002557
TCONS_00004756 other downstream 687152 5950463 ~ 5950578 (-) True XLOC_002554
TCONS_00004738 other downstream 1613445 5020277 ~ 5024285 (-) True XLOC_002543
TCONS_00004768 other upstream 21892 6661059 ~ 6662868 (-) True XLOC_002563
TCONS_00004769 other upstream 38506 6677673 ~ 6679486 (-) True XLOC_002564
TCONS_00004770 other upstream 54351 6693518 ~ 6695332 (-) True XLOC_002565
TCONS_00004771 other upstream 86490 6725657 ~ 6727114 (-) True XLOC_002566
TCONS_00004775 other upstream 147162 6786329 ~ 6825122 (-) False XLOC_002568

Expression Profile

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