RNA id: TU1933767



Basic Information


Item Value
RNA id TU1933767
length 650
lncRNA type intronic
GC content 0.40
exon number 1
gene id G1690692
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36793983 ~ 36794632 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcccacctggttaaataaaggtgttctcaactggcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcccacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcccacctggttaaataaaggtgttctcaactagcccacctggttaaataaaggtgttctcaactagtctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctctactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctctactagcctacctggttaaataaaggtgttctctactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagcctacctggttaaataaaggtgttctcaactagc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1933746 lncRNA downstream 35383 36758398 ~ 36758600 (-) True G1690672
TU1933743 lncRNA downstream 45461 36748281 ~ 36748522 (-) True G1690669
TU1933741 lncRNA downstream 49752 36743939 ~ 36744231 (-) True G1690667
TU1933740 lncRNA downstream 52060 36741586 ~ 36741923 (-) True G1690666
TU1933739 lncRNA downstream 53277 36740452 ~ 36740706 (-) True G1690665
TU1933768 lncRNA upstream 4101 36798733 ~ 36799024 (-) True G1690693
TU1933769 lncRNA upstream 9189 36803821 ~ 36804109 (-) True G1690694
TU1933770 lncRNA upstream 17299 36811931 ~ 36813912 (-) True G1690695
TU1933785 lncRNA upstream 32807 36827439 ~ 36827692 (-) True G1690710
TU1933802 lncRNA upstream 42340 36836972 ~ 36837618 (-) True G1690727
XM_021576579.2 mRNA downstream 201219 36583534 ~ 36592764 (-) True LOC110499436
XM_036956292.1 mRNA downstream 406311 36344254 ~ 36387672 (-) False LOC110499433
XM_036956293.1 mRNA downstream 406311 36344254 ~ 36387672 (-) True LOC110499433
XM_036956291.1 mRNA downstream 406314 36344254 ~ 36387669 (-) False LOC110499433
XM_036956287.1 mRNA downstream 457531 36259840 ~ 36336452 (-) False LOC110499540
XM_021576581.2 mRNA upstream 97214 36891846 ~ 36896982 (-) False LOC110499438
XM_021576582.2 mRNA upstream 125546 36920178 ~ 36935086 (-) True LOC110499441
XR_005038406.1 mRNA upstream 151634 36946266 ~ 36946381 (-) True LOC118942469
XM_036956298.1 mRNA upstream 261321 37055953 ~ 37197139 (-) False LOC110499443
XM_036956299.1 mRNA upstream 283412 37078044 ~ 37197139 (-) False LOC110499443
TU1933722 other downstream 90542 36702546 ~ 36703441 (-) True G1690649
TU1933425 other downstream 373383 36419716 ~ 36420600 (-) True G1690367
TU1932968 other downstream 668585 36120507 ~ 36125398 (-) False LOC110499427
TU1933771 other upstream 15067 36809699 ~ 36810143 (-) True G1690696
TU1933942 other upstream 98915 36893547 ~ 36896206 (-) True LOC110499438
TU1934589 other upstream 444195 37238827 ~ 37239310 (-) True G1691432
TU1935552 other upstream 1688263 38482895 ~ 38485362 (-) True G1692288
TU1935564 other upstream 1694918 38489550 ~ 38492040 (-) True oxld1

Expression Profile