RNA id: TU1933771



Basic Information


Item Value
RNA id TU1933771
length 445
RNA type TUCP
GC content 0.49
exon number 1
gene id G1690696
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 36809699 ~ 36810143 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AAAACATAtaattgtgtaccttagcagcttgTCTACCAAAAcatactattgtgtaccttagcagtgCTTCCCTGCTTCTTtaacacatgacagcccgcttgcagtttgccaaaaggcacctaaatgactctgaccatgagaaaaaagattctctggtctgatgaaatcaagattgatcCCTTcggcctgaatgtcaagtgtcacgtctggaggaaacctggcaccgtccctactgtgaagcatgatggtggcagatTCATGCTGTGGAgaggtttttcagcagcagggactgggaggctagtcatgatcaatgaccctaaacacacagccaagacaacgcaggagtggcttagggacaagtctctgaatgtccttgaggggcccagccagagcccggacttgaacccgatcgaacatctctggagagacctgaaaatagctgggc

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1933769 lncRNA downstream 5590 36803821 ~ 36804109 (-) True G1690694
TU1933768 lncRNA downstream 10675 36798733 ~ 36799024 (-) True G1690693
TU1933767 lncRNA downstream 15067 36793983 ~ 36794632 (-) True G1690692
TU1933746 lncRNA downstream 51099 36758398 ~ 36758600 (-) True G1690672
TU1933743 lncRNA downstream 61177 36748281 ~ 36748522 (-) True G1690669
TU1933770 lncRNA upstream 1788 36811931 ~ 36813912 (-) True G1690695
TU1933785 lncRNA upstream 17296 36827439 ~ 36827692 (-) True G1690710
TU1933802 lncRNA upstream 26829 36836972 ~ 36837618 (-) True G1690727
TU1933825 lncRNA upstream 37154 36847297 ~ 36848575 (-) True G1690738
TU1933939 lncRNA upstream 77915 36888058 ~ 36924407 (-) True G1690831
XM_021576579.2 mRNA downstream 216935 36583534 ~ 36592764 (-) True LOC110499436
XM_036956292.1 mRNA downstream 422027 36344254 ~ 36387672 (-) False LOC110499433
XM_036956293.1 mRNA downstream 422027 36344254 ~ 36387672 (-) True LOC110499433
XM_036956291.1 mRNA downstream 422030 36344254 ~ 36387669 (-) False LOC110499433
XM_036956287.1 mRNA downstream 473247 36259840 ~ 36336452 (-) False LOC110499540
XM_021576581.2 mRNA upstream 81703 36891846 ~ 36896982 (-) False LOC110499438
XM_021576582.2 mRNA upstream 110035 36920178 ~ 36935086 (-) True LOC110499441
XR_005038406.1 mRNA upstream 136123 36946266 ~ 36946381 (-) True LOC118942469
XM_036956298.1 mRNA upstream 245810 37055953 ~ 37197139 (-) False LOC110499443
XM_036956299.1 mRNA upstream 267901 37078044 ~ 37197139 (-) False LOC110499443
TU1933722 other downstream 106258 36702546 ~ 36703441 (-) True G1690649
TU1933425 other downstream 389099 36419716 ~ 36420600 (-) True G1690367
TU1932968 other downstream 684301 36120507 ~ 36125398 (-) False LOC110499427
TU1932966 other downstream 684301 36120632 ~ 36125398 (-) False LOC110499427
TU1932967 other downstream 684301 36120632 ~ 36125398 (-) True LOC110499427
TU1933942 other upstream 83404 36893547 ~ 36896206 (-) True LOC110499438
TU1934589 other upstream 428684 37238827 ~ 37239310 (-) True G1691432
TU1935552 other upstream 1672752 38482895 ~ 38485362 (-) True G1692288
TU1935564 other upstream 1679407 38489550 ~ 38492040 (-) True oxld1
TU1935682 other upstream 1757237 38567380 ~ 38568189 (-) True G1692405

Expression Profile