RNA id: TU1934064


Basic Information

Item Value
RNA id TU1934064
length 1689
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1690939
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 37053777 ~ 37055465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTTTTGGAAGTTACATTCAATAGCGGAACCAAAGGAGGAGTAAATTGACAGAACAGGTAATAACACTACACGGGTATAGAAATGTCCCAGGAATGGAGGAGTAAATTGACAGAACAGGTAATAACACGGGTATAGAAATGTCCCAGGAATGGTCGACAGTGCATTAAGTCCGCCGCCCATGAAATCAGAATATCGATCATCAAAAACTTAATTCCAAGGGTTGCAGATCACAAATAGATATATTTATAttcattgtatatatatatatatatatataaatgttttttcttttctttcagTAATACAATAAATGTTAACATTAGTTAATGGCTACAATGGACTTTCCCCCACCATGTCTGACAGCGTGTTATTAGTACAACGTTTAAATATAGAAGGATGTTACTAAAGTAGAGCTCGATATAAATAGAAGGTTTTAAAGAGAATTTAATAAATCTTTATCAGTTGGTCTGACGGAACTGTCaatcccttccttctctctgtctctcagaacGATCCGGAGCCCATATCTAAGACGGATGGAGGAGTcaacctgcatcccaaatggctccctattcactatatagtgctctgcttttgaccagtgccgtactgtatagggaatagggtgaatgTTGGGATACGCCGATGGGTTGTAGACAGCTCCCATGTTTCTAATTTATAGCTACATATCCAACCCGCCCACCTCCCTCACCCCGACACAATGTACAAAAGAGGCTGTTTGTTTACCACACATCACAGCCACCtcaaccacaacaccacaacaacatgttTTGATAGCAACGCTGGGGTTTTGGGGAGGGCTGTTGTGGCCGACTGTATCTACAAACTGTATGTAGGATCTTCCTTTGATTACCCTGTTGCAGGAAAACGTTCCTACAATGCAGGATATTTAAAACTTGTAGTATTTTTCAGGTATAAGAATGCTTcagaagtttgtcatttccactttgaaatttcagacttgatttttccCTTACGGACATTTTTTCAGACGCTACAAAAAtctccattcattataatccacatcatAATCCACAATATAATCcacattataatccacattataatccacattataattcaaatttcctgttgctgtatgattattttcctactgtaggagactggctcaaattaagatcctacatctgtaaataCAATAGAGTGGGTGTTCCCTGACTTTTTACATGATTCTCTGCTTCCTCTCTGCTAAACACTTCATTGGCTTTGATGTTGGAGCATTCAGGGGGTCTTTTAGTTCAAGCTACAGAGATACAAAGTGGACTGGAAGCGCAACCTGCAGAGGAGCTGTTTTTTAAGTGGAAGGAAGCTCTACACCAGAGTTTAACTGTCCCCCTTTATATGACATCACTTGTTGTTTTCACATGACCCACAGGAAGTAATTCATTCTAAATTGTCAAAGATTGTTGACTGCCGAGCGAGGTTGACCTGTAAACGTGGCCCAAATGGGTCAGAGTTTGTATGTAAATGTCACACGTTTTCACCTTTCAAACAATGAACCGAGGACATTTGTGGAAGATGCAGCCTAGCTCTCATTTGCCTGTCATTTGGTGCCATTTGTTGGCTTTGCTATGGTGTTACCGCAGTGTTACTGTGGCATTACCATGACGACCAAATAAGAGTTATGTCAGGAGGACAAGCCACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1934058 lncRNA upstream 3249 37050299 ~ 37050528 (+) True G1690938
TU1934051 lncRNA upstream 11200 37042236 ~ 37042577 (+) True G1690931
TU1933910 lncRNA upstream 66546 36987075 ~ 36987231 (+) True G1690805
TU1933909 lncRNA upstream 67003 36986267 ~ 36986774 (+) True G1690804
TU1933915 lncRNA upstream 79866 36973693 ~ 36973911 (+) True G1690810
TU1934075 lncRNA downstream 14230 37069695 ~ 37070886 (+) True G1690950
TU1934086 lncRNA downstream 41828 37097293 ~ 37099333 (+) True G1690961
TU1934132 lncRNA downstream 158351 37213816 ~ 37214047 (+) True G1691006
TU1934142 lncRNA downstream 183627 37239092 ~ 37239406 (+) True G1691016
TU1934153 lncRNA downstream 224333 37279798 ~ 37280001 (+) True G1691027
XM_021576583.2 mRNA upstream 68217 36965177 ~ 36985560 (+) True LOC110499442
XR_005038404.1 mRNA upstream 135126 36918536 ~ 36918651 (+) True LOC118942467
XR_002469960.2 mRNA upstream 137590 36914324 ~ 36916187 (+) True LOC110499440
XR_005038001.1 mRNA upstream 144207 36906650 ~ 36909570 (+) False LOC118942068
XM_021576585.2 mRNA downstream 1020508 38075973 ~ 38081270 (+) True LOC110499446
XM_036956302.1 mRNA downstream 1028430 38083895 ~ 38203970 (+) False LOC110499447
XM_036956304.1 mRNA downstream 1028430 38083895 ~ 38203970 (+) False LOC110499447
XM_036956303.1 mRNA downstream 1028431 38083896 ~ 38203970 (+) False LOC110499447
XM_036956305.1 mRNA downstream 1028431 38083896 ~ 38203970 (+) True LOC110499447
TU1933843 other upstream 173039 36878051 ~ 36880738 (+) True G1690753
TU1933112 other upstream 741079 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 741079 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 777834 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 788796 36264660 ~ 36264981 (+) False G1690092
TU1934277 other downstream 486455 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 595161 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 749078 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 1167040 38222505 ~ 38222735 (+) True G1691990
TU1935201 other downstream 1172550 38228015 ~ 38228551 (+) True G1691992

Expression Profile