RNA id: TU1934142


Basic Information

Item Value
RNA id TU1934142
length 315
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1691016
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 37239092 ~ 37239406 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccacattgactctgtaccggtaccccctgtatatagcctccacattgactctgtaccggtacccccctgtatatagcctccacattgactctgtaccagtaccccctgtatatagcctccacattgactctgtaccggtacccccctgtatatagcctccacattgactctgtaccgataccccctgtatatagcctccacattgactctgtaccggtacccccctgtatatagcctccacattgactctgtaccggtacccccctgtatatagcctccacattgcctctgtaccggtaccccctgtactgagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1934132 lncRNA upstream 25045 37213816 ~ 37214047 (+) True G1691006
TU1934086 lncRNA upstream 139759 37097293 ~ 37099333 (+) True G1690961
TU1934075 lncRNA upstream 168206 37069695 ~ 37070886 (+) True G1690950
TU1934064 lncRNA upstream 183627 37053777 ~ 37055465 (+) True G1690939
TU1934058 lncRNA upstream 188564 37050299 ~ 37050528 (+) True G1690938
TU1934153 lncRNA downstream 40392 37279798 ~ 37280001 (+) True G1691027
TU1934154 lncRNA downstream 40635 37280041 ~ 37280242 (+) True G1691028
TU1934155 lncRNA downstream 43099 37282505 ~ 37282739 (+) True G1691029
TU1934159 lncRNA downstream 47488 37286894 ~ 37287124 (+) True G1691033
TU1934231 lncRNA downstream 230652 37470058 ~ 37473678 (+) True G1691099
XM_021576583.2 mRNA upstream 253532 36965177 ~ 36985560 (+) True LOC110499442
XR_005038404.1 mRNA upstream 320441 36918536 ~ 36918651 (+) True LOC118942467
XR_002469960.2 mRNA upstream 322905 36914324 ~ 36916187 (+) True LOC110499440
XR_005038001.1 mRNA upstream 329522 36906650 ~ 36909570 (+) False LOC118942068
XM_021576585.2 mRNA downstream 836567 38075973 ~ 38081270 (+) True LOC110499446
XM_036956302.1 mRNA downstream 844489 38083895 ~ 38203970 (+) False LOC110499447
XM_036956304.1 mRNA downstream 844489 38083895 ~ 38203970 (+) False LOC110499447
XM_036956303.1 mRNA downstream 844490 38083896 ~ 38203970 (+) False LOC110499447
XM_036956305.1 mRNA downstream 844490 38083896 ~ 38203970 (+) True LOC110499447
TU1933843 other upstream 358354 36878051 ~ 36880738 (+) True G1690753
TU1933112 other upstream 926394 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 926394 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 963149 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 974111 36264660 ~ 36264981 (+) False G1690092
TU1934277 other downstream 302514 37541920 ~ 37543265 (+) True G1691142
TU1934332 other downstream 411220 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 565137 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 983099 38222505 ~ 38222735 (+) True G1691990
TU1935201 other downstream 988609 38228015 ~ 38228551 (+) True G1691992

Expression Profile