RNA id: TU1934277



Basic Information


Item Value
RNA id TU1934277
length 913
RNA type TUCP
GC content 0.43
exon number 3
gene id G1691142
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 37541920 ~ 37543265 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


GCGATCAGTAGAGTAAAACCACAAGTGAAACTACAATACATGCTGTATTGGAGttagcacacgcacgcacgcgcgcacacacctGTGTAGTTGTTTCTGTGTGATGCAATTCCACCAGCAGATGTCATGTGTCAACATGTACAATAcaatatgctctctctctctcagtgtgtcaacatgtacagtacagtatgctctctctctcagtgtgtcaacatgtacagtacaatatgctctctctctctcagtgtgtcaacatgtacagtacagtatgctctctctctcccagtgtgtcaacatgtacagtacagtatgctctctctctcagtgtgtcaacatgtacagtacaatatgctctctctctctcagtgtgtcaacatgtacagtacagtatgctctctctctcagtgtgtcaacatgtacagtacaatatgctctctctctctcagtgtgtcaacatgtacagtacaatatgctctctctctcttagtgtgtcaacatgtacagtacaatatgctctctctctcccagtgtgtcaacatgtacagtacagtatgctctctctctcagtgtgtcaacatgtacagtacagtatgctctctctctctcagtgtgtcaacatgtacagtacagtatgctctctctctctcagtgtgtcaacatgtacagtacagtatgctctctctctcagtgtgtcaacatgtacagtacagtatgctctctctcagtgtgtcaacatgtacagtacagtatgctgtctctctctcagtgtgtcaacatgtacagtacagtatgctctctctctcagtgtgtcaacatgtatagtacagtatgctctctctctcagtgtgtcaacatgtacagtacagtatgatctctctctctgtgcttcaaACAACTCCCAACTCTTATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1934276 lncRNA upstream 764 37540821 ~ 37541156 (+) True G1691141
TU1934269 lncRNA upstream 8776 37532925 ~ 37533144 (+) True G1691134
TU1934268 lncRNA upstream 9367 37532346 ~ 37532553 (+) True G1691133
TU1934259 lncRNA upstream 24857 37516807 ~ 37517063 (+) True G1691124
TU1934234 lncRNA upstream 64719 37472360 ~ 37477201 (+) True G1691100
TU1934278 lncRNA downstream 286 37543551 ~ 37543761 (+) True G1691143
TU1934287 lncRNA downstream 15656 37558921 ~ 37559202 (+) True G1691150
TU1934288 lncRNA downstream 16266 37559531 ~ 37559799 (+) True G1691151
TU1934303 lncRNA downstream 60060 37603325 ~ 37603621 (+) True G1691166
TU1934305 lncRNA downstream 68272 37611537 ~ 37613518 (+) True G1691168
XM_021576583.2 mRNA upstream 556360 36965177 ~ 36985560 (+) True LOC110499442
XR_005038404.1 mRNA upstream 623269 36918536 ~ 36918651 (+) True LOC118942467
XR_002469960.2 mRNA upstream 625733 36914324 ~ 36916187 (+) True LOC110499440
XR_005038001.1 mRNA upstream 632350 36906650 ~ 36909570 (+) False LOC118942068
XR_005038002.1 mRNA upstream 632350 36907111 ~ 36909570 (+) True LOC118942068
XM_021576585.2 mRNA downstream 532708 38075973 ~ 38081270 (+) True LOC110499446
XM_036956302.1 mRNA downstream 540630 38083895 ~ 38203970 (+) False LOC110499447
XM_036956304.1 mRNA downstream 540630 38083895 ~ 38203970 (+) False LOC110499447
XM_036956303.1 mRNA downstream 540631 38083896 ~ 38203970 (+) False LOC110499447
XM_036956305.1 mRNA downstream 540631 38083896 ~ 38203970 (+) True LOC110499447
TU1933843 other upstream 661182 36878051 ~ 36880738 (+) True G1690753
TU1933112 other upstream 1229222 36304939 ~ 36312698 (+) False G1690116
TU1933113 other upstream 1229222 36304939 ~ 36312698 (+) True G1690116
TU1933095 other upstream 1265977 36275482 ~ 36275943 (+) True G1690099
TU1933087 other upstream 1276939 36264660 ~ 36264981 (+) False G1690092
TU1934332 other downstream 107361 37650626 ~ 37654064 (+) True G1691189
TU1934415 other downstream 261278 37804543 ~ 37809061 (+) True G1691267
TU1935199 other downstream 679240 38222505 ~ 38222735 (+) True G1691990
TU1935201 other downstream 684750 38228015 ~ 38228551 (+) True G1691992
TU1935683 other downstream 1025004 38568269 ~ 38569446 (+) True G1692406

Expression Profile