RNA id: TU1934496


Basic Information

Item Value
RNA id TU1934496
length 318
lncRNA type inter_gene
GC content 0.54
exon number 1
gene id G1691343
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 37980272 ~ 37980589 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTAGTCGTGGACTCCGAgtcgcctctcttctctctctgtcctgttacTGAGCGCTGGCTCTCACTCTGCtgctattctgtctctctctatctctctctccctctccactgctATCCctgcactggacacacacacacacacttaagtcACACGCTCACacgctgctctgctctcctccgcTACCAAAGGAAGTGCTCAGAtcaacagaatgagagagagcgagtgattGAGAAAGCGTGTaagcgagagtgagagaaaagtgggcgagcgagagagagagagaggaggaggaggaggagggggaagaggaggagtagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1934478 lncRNA upstream 28534 37951292 ~ 37951738 (+) True G1691328
TU1934435 lncRNA upstream 136801 37843154 ~ 37843471 (+) True G1691287
TU1934414 lncRNA upstream 175370 37804543 ~ 37804902 (+) False G1691267
TU1934318 lncRNA upstream 351906 37627939 ~ 37628366 (+) True G1691176
TU1934307 lncRNA upstream 359218 37620844 ~ 37621054 (+) True G1691170
TU1935034 lncRNA downstream 617 37981206 ~ 37981911 (+) True G1691838
TU1935036 lncRNA downstream 5250 37985839 ~ 37986163 (+) True G1691840
TU1935070 lncRNA downstream 37219 38017808 ~ 38018699 (+) True G1691871
TU1935081 lncRNA downstream 46186 38026775 ~ 38027156 (+) True G1691882
TU1935090 lncRNA downstream 58108 38038697 ~ 38039041 (+) True G1691891
XM_021576583.2 mRNA upstream 994712 36965177 ~ 36985560 (+) True LOC110499442
XR_005038404.1 mRNA upstream 1061621 36918536 ~ 36918651 (+) True LOC118942467
XR_002469960.2 mRNA upstream 1064085 36914324 ~ 36916187 (+) True LOC110499440
XR_005038001.1 mRNA upstream 1070702 36906650 ~ 36909570 (+) False LOC118942068
XM_021576585.2 mRNA downstream 95384 38075973 ~ 38081270 (+) True LOC110499446
XM_036956302.1 mRNA downstream 103306 38083895 ~ 38203970 (+) False LOC110499447
XM_036956304.1 mRNA downstream 103306 38083895 ~ 38203970 (+) False LOC110499447
XM_036956303.1 mRNA downstream 103307 38083896 ~ 38203970 (+) False LOC110499447
XM_036956305.1 mRNA downstream 103307 38083896 ~ 38203970 (+) True LOC110499447
TU1934415 other upstream 171211 37804543 ~ 37809061 (+) True G1691267
TU1934332 other upstream 326208 37650626 ~ 37654064 (+) True G1691189
TU1934277 other upstream 437007 37541920 ~ 37543265 (+) True G1691142
TU1933843 other upstream 1099534 36878051 ~ 36880738 (+) True G1690753
TU1933113 other upstream 1667574 36304939 ~ 36312698 (+) True G1690116
TU1935199 other downstream 241916 38222505 ~ 38222735 (+) True G1691990
TU1935201 other downstream 247426 38228015 ~ 38228551 (+) True G1691992
TU1935683 other downstream 587680 38568269 ~ 38569446 (+) True G1692406
TU1935894 other downstream 730362 38710951 ~ 38712291 (+) True G1692568
TU1936048 other downstream 859345 38839934 ~ 38840271 (+) True G1692702

Expression Profile