RNA id: TU1935090


Basic Information

Item Value
RNA id TU1935090
length 345
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G1691891
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 38038697 ~ 38039041 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtACATCACATCCGTACATCACATCCGTACATCACATCcgtacatcacatcacatccgtACATCACATCCGTACATCACATCCATACATCACatccatacatcacatcacatcacatccatacatcacatcacatccatacatcacatcacatccatacatcacatcacatcacatcacatctatacatcacatcacatccatacatcacatcacatccgtacatcacatcacatcacatccgtacatcacatcacatcacatcacatccatacatcacatcacatcacatcacatctatacatcacatcacatccatacatcacatcacatccatacatcacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1935081 lncRNA upstream 11541 38026775 ~ 38027156 (+) True G1691882
TU1935070 lncRNA upstream 19998 38017808 ~ 38018699 (+) True G1691871
TU1935036 lncRNA upstream 52534 37985839 ~ 37986163 (+) True G1691840
TU1935034 lncRNA upstream 56786 37981206 ~ 37981911 (+) True G1691838
TU1934496 lncRNA upstream 58108 37980272 ~ 37980589 (+) True G1691343
TU1935095 lncRNA downstream 10818 38049859 ~ 38050929 (+) True G1691896
TU1935108 lncRNA downstream 35343 38074384 ~ 38074658 (+) True G1691908
TU1935158 lncRNA downstream 102818 38141859 ~ 38142115 (+) True G1691954
TU1935167 lncRNA downstream 116046 38155087 ~ 38155796 (+) True G1691963
TU1935173 lncRNA downstream 136529 38175570 ~ 38175814 (+) True G1691969
XM_021576583.2 mRNA upstream 1053137 36965177 ~ 36985560 (+) True LOC110499442
XR_005038404.1 mRNA upstream 1120046 36918536 ~ 36918651 (+) True LOC118942467
XR_002469960.2 mRNA upstream 1122510 36914324 ~ 36916187 (+) True LOC110499440
XR_005038001.1 mRNA upstream 1129127 36906650 ~ 36909570 (+) False LOC118942068
XM_021576585.2 mRNA downstream 36932 38075973 ~ 38081270 (+) True LOC110499446
XM_036956302.1 mRNA downstream 44854 38083895 ~ 38203970 (+) False LOC110499447
XM_036956304.1 mRNA downstream 44854 38083895 ~ 38203970 (+) False LOC110499447
XM_036956303.1 mRNA downstream 44855 38083896 ~ 38203970 (+) False LOC110499447
XM_036956305.1 mRNA downstream 44855 38083896 ~ 38203970 (+) True LOC110499447
TU1934415 other upstream 229636 37804543 ~ 37809061 (+) True G1691267
TU1934332 other upstream 384633 37650626 ~ 37654064 (+) True G1691189
TU1934277 other upstream 495432 37541920 ~ 37543265 (+) True G1691142
TU1933843 other upstream 1157959 36878051 ~ 36880738 (+) True G1690753
TU1933113 other upstream 1725999 36304939 ~ 36312698 (+) True G1690116
TU1935199 other downstream 183464 38222505 ~ 38222735 (+) True G1691990
TU1935201 other downstream 188974 38228015 ~ 38228551 (+) True G1691992
TU1935683 other downstream 529228 38568269 ~ 38569446 (+) True G1692406
TU1935894 other downstream 671910 38710951 ~ 38712291 (+) True G1692568
TU1936048 other downstream 800893 38839934 ~ 38840271 (+) True G1692702

Expression Profile