RNA id: TU1935198


Basic Information

Item Value
RNA id TU1935198
length 1549
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id G1691989
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 38216891 ~ 38218610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTTTATTTATATTTCATAACGTACAGAAAGTAGAGTGGGGTGGGGCACATCTTACTGACAGCATCCCTAAACTAGTCCTGTTTAGTTTAAATCACGACCAGGGCACATCTTACTGACAGCATCCCTAAACTAGTCCTGTTTGTTTAAATCACGACCAGGGCACATCTTACTGACAGCATCCCCATACTAGTCCTGTTTGTTTAAATAATGACCAGGGCACATCTTACTGACAGCATCCCCATACTAGTCCTGTTTGTTTAAATAATGACCAGGGCACATCTTACTGACAGCATCCCTAAACTAGTCCTGTTTGTTTAAATAATGACCAGGGCACATCTTACTGACAGCATCCCTAAACTAGTCCTGTTTGTTTAAATCACGACCAGGACACATCTTACTGACAGCATCCCTAAACTAGTCCTGTTTGTTTAAATCACGACCAGGACACATCTTACTGACAGCATCCCTAAACTAGTCCTGTTTGTTTAAATCACGACCAGGGCACATCTTACTGACAGCATCCCTAAACTAGTCATGTTTGTTTAAATCACGACCAGGGCACATCTTACTGACAGCATCCCTAAACTAGTCCTGTTTGTTTAAATCACGACCAGGGCACATCTTACTGACAGCACCCCTAAACTAGTCCTGCTCGTTTAAATCACGACCAGGGCACATCTTACTGACAGCATCCCTAAACTAGTCATGTTCGTTTAAATCACGACCAGGGCAAGGCCAAACATTTCTCATCAACACATCCCTTTCATCTCACTAGCCTGGGCACCAGgagtggcatgatggcacaaacagactggtacccaggctgtAGTCTCACCACTAGTGGGTTAAAACAATCTAGATCAAATATCCTATGTTCCTATTTGCCCCCCAGACTTCACTGAATACTTCTCTTTGGCAAcaataaaacataaatacatgTACTTTTAACTCACTTCCAGGTAAATTCCAGGTAATTTCTTGATATTCTTAAACGTAATTTTTCTTTTTTTGAGATACAAAAATAGTCCATACAGACAGCGCTCTAGATGGATCTATGGATGCTAAACTATTACAGAATAGTAAATCCCTAGAAAGGCTAACAAACACTAAGCAGAACACACTTACTGCATGGAGACCAGAGTCGATCTTTAAAACATAGACATAGAATCTATGTAATTCCATATCTATGTTTTGAACTAAATTGACAACCTGGTTCTTTGAGGCTAAAGACCAGAGTGattttagcctggtcccagatcagtttgtacCGTCTTGCCTACCTACAGTATGGTCATTGGAGTAGGCCAGAGGGTACAAACGGACCTGAGACCATGCTACAGTGATTGGCTTATCAGGCTGGTATAGCAGGCTGATTGGACTGTATGGGTTCTTTGTTACAACCACATCCATCCCTTTTTCATTTCTATAGCAAACACATTGTCACATACACAGCAGAGTCAAAAAAGTccatgaattcaaaatgtattttccattgTTAAAATGGTGAAAAGACAATACACTGACTAATCCATGTGACATCACCAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1935173 lncRNA upstream 41077 38175570 ~ 38175814 (+) True G1691969
TU1935167 lncRNA upstream 61095 38155087 ~ 38155796 (+) True G1691963
TU1935158 lncRNA upstream 74776 38141859 ~ 38142115 (+) True G1691954
TU1935108 lncRNA upstream 142233 38074384 ~ 38074658 (+) True G1691908
TU1935095 lncRNA upstream 165962 38049859 ~ 38050929 (+) True G1691896
TU1935119 lncRNA downstream 11216 38229826 ~ 38230188 (+) True G1691915
TU1935214 lncRNA downstream 24702 38243312 ~ 38244355 (+) True G1692003
TU1935245 lncRNA downstream 104431 38323041 ~ 38323340 (+) True G1692028
TU1935246 lncRNA downstream 106313 38324923 ~ 38325185 (+) True G1692029
TU1935406 lncRNA downstream 110927 38329537 ~ 38329877 (+) True G1692174
XM_036956302.1 mRNA upstream 12921 38083895 ~ 38203970 (+) False LOC110499447
XM_036956304.1 mRNA upstream 12921 38083895 ~ 38203970 (+) False LOC110499447
XM_036956303.1 mRNA upstream 12921 38083896 ~ 38203970 (+) False LOC110499447
XM_036956305.1 mRNA upstream 12921 38083896 ~ 38203970 (+) True LOC110499447
XM_021576585.2 mRNA upstream 135621 38075973 ~ 38081270 (+) True LOC110499446
XR_005038003.1 mRNA downstream 362125 38580735 ~ 38594305 (+) True LOC110499600
XM_036956317.1 mRNA downstream 376209 38594819 ~ 38638772 (+) False LOC110499544
XM_036956318.1 mRNA downstream 389261 38607871 ~ 38638772 (+) False LOC110499544
XM_036955563.1 mRNA downstream 420985 38639595 ~ 38640649 (+) True LOC118942016
XM_021576600.2 mRNA downstream 838426 39057036 ~ 39068138 (+) False LOC110499463
TU1934415 other upstream 407830 37804543 ~ 37809061 (+) True G1691267
TU1934332 other upstream 562827 37650626 ~ 37654064 (+) True G1691189
TU1934277 other upstream 673626 37541920 ~ 37543265 (+) True G1691142
TU1933843 other upstream 1336153 36878051 ~ 36880738 (+) True G1690753
TU1933113 other upstream 1904193 36304939 ~ 36312698 (+) True G1690116
TU1935199 other downstream 3895 38222505 ~ 38222735 (+) True G1691990
TU1935201 other downstream 9405 38228015 ~ 38228551 (+) True G1691992
TU1935683 other downstream 349659 38568269 ~ 38569446 (+) True G1692406
TU1935894 other downstream 492341 38710951 ~ 38712291 (+) True G1692568
TU1936048 other downstream 621324 38839934 ~ 38840271 (+) True G1692702

Expression Profile