RNA id: TU1935698


Basic Information

Item Value
RNA id TU1935698
length 249
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G1692421
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 38578192 ~ 38578440 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggttgcagaccatgtttttctccattaggaggacaaaggttgtagaccattgctgaatcttttaaccataccacatggttaaactcttagactatcgataccgacagaataagaacaagtctttgatattgctgaatcttttaaccataccacgtggttaaactcttagactatcgataccgacagaataagaacaagtctttgatattaattactagtctgcagctaggaattcggtatcattgaacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1935681 lncRNA upstream 10012 38567872 ~ 38568180 (+) True G1692404
TU1935654 lncRNA upstream 33519 38544444 ~ 38544673 (+) True G1692381
TU1935651 lncRNA upstream 35546 38542227 ~ 38542646 (+) True G1692378
TU1935523 lncRNA upstream 67962 38509925 ~ 38510230 (+) True G1692266
TU1935504 lncRNA upstream 89208 38488720 ~ 38488984 (+) True G1692258
TU1935700 lncRNA downstream 376 38578816 ~ 38579055 (+) True G1692423
TU1935722 lncRNA downstream 24652 38603092 ~ 38603485 (+) True G1692440
TU1935706 lncRNA downstream 57420 38635860 ~ 38637120 (+) False LOC110499544
TU1935707 lncRNA downstream 58176 38636616 ~ 38637120 (+) False LOC110499544
TU1935703 lncRNA downstream 58752 38637192 ~ 38638149 (+) True LOC110499544
XM_036956302.1 mRNA upstream 374222 38083895 ~ 38203970 (+) False LOC110499447
XM_036956304.1 mRNA upstream 374222 38083895 ~ 38203970 (+) False LOC110499447
XM_036956303.1 mRNA upstream 374222 38083896 ~ 38203970 (+) False LOC110499447
XM_036956305.1 mRNA upstream 374222 38083896 ~ 38203970 (+) True LOC110499447
XM_021576585.2 mRNA upstream 496922 38075973 ~ 38081270 (+) True LOC110499446
XR_005038003.1 mRNA downstream 2295 38580735 ~ 38594305 (+) True LOC110499600
XM_036956317.1 mRNA downstream 16379 38594819 ~ 38638772 (+) False LOC110499544
XM_036956318.1 mRNA downstream 29431 38607871 ~ 38638772 (+) False LOC110499544
XM_036955563.1 mRNA downstream 61155 38639595 ~ 38640649 (+) True LOC118942016
XM_021576600.2 mRNA downstream 478596 39057036 ~ 39068138 (+) False LOC110499463
TU1935683 other upstream 8746 38568269 ~ 38569446 (+) True G1692406
TU1935201 other upstream 349641 38228015 ~ 38228551 (+) True G1691992
TU1935199 other upstream 355457 38222505 ~ 38222735 (+) True G1691990
TU1934415 other upstream 769131 37804543 ~ 37809061 (+) True G1691267
TU1934332 other upstream 924128 37650626 ~ 37654064 (+) True G1691189
TU1935894 other downstream 132511 38710951 ~ 38712291 (+) True G1692568
TU1936048 other downstream 261494 38839934 ~ 38840271 (+) True G1692702
TU1936590 other downstream 777905 39356345 ~ 39359635 (+) False G1693184
TU1937209 other downstream 1302909 39881349 ~ 39881843 (+) True G1693699
TU1937210 other downstream 1303518 39881958 ~ 39882625 (+) True G1693700

Expression Profile