RNA id: TU1935722


Basic Information

Item Value
RNA id TU1935722
length 223
lncRNA type intronic
GC content 0.40
exon number 2
gene id G1692440
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 38603092 ~ 38603485 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctaTGACAGTACTCTGGATGTGGGACAGACAAGCTGTCTGGAGGTAAATAGACAAGACATTTTGATGCACGTTTCTAAATGGTGATTAGGGAAAGTTCCTGGGTTTGAATAGGAAATGCTTTTAATTATGTTAAACCAAGGTAAAGAGAGCTGGTGGTCATAGGTGCTAGGAAGGCAGGAAGTCCTGGGTTTGAATAGGAAGTGCTTTTAATTATGTTAAACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1935700 lncRNA upstream 24037 38578816 ~ 38579055 (+) True G1692423
TU1935698 lncRNA upstream 24652 38578192 ~ 38578440 (+) True G1692421
TU1935681 lncRNA upstream 34912 38567872 ~ 38568180 (+) True G1692404
TU1935654 lncRNA upstream 58419 38544444 ~ 38544673 (+) True G1692381
TU1935651 lncRNA upstream 60446 38542227 ~ 38542646 (+) True G1692378
TU1935706 lncRNA downstream 32375 38635860 ~ 38637120 (+) False LOC110499544
TU1935707 lncRNA downstream 33131 38636616 ~ 38637120 (+) False LOC110499544
TU1935703 lncRNA downstream 33707 38637192 ~ 38638149 (+) True LOC110499544
TU1935708 lncRNA downstream 40038 38643523 ~ 38645620 (+) False G1692428
TU1935709 lncRNA downstream 40038 38643523 ~ 38645620 (+) False G1692428
XR_005038003.1 mRNA upstream 8787 38580735 ~ 38594305 (+) True LOC110499600
XM_036956302.1 mRNA upstream 399122 38083895 ~ 38203970 (+) False LOC110499447
XM_036956304.1 mRNA upstream 399122 38083895 ~ 38203970 (+) False LOC110499447
XM_036956303.1 mRNA upstream 399122 38083896 ~ 38203970 (+) False LOC110499447
XM_036956305.1 mRNA upstream 399122 38083896 ~ 38203970 (+) True LOC110499447
XM_036956318.1 mRNA downstream 4386 38607871 ~ 38638772 (+) False LOC110499544
XM_036955563.1 mRNA downstream 36110 38639595 ~ 38640649 (+) True LOC118942016
XM_021576600.2 mRNA downstream 453551 39057036 ~ 39068138 (+) False LOC110499463
XM_021576601.2 mRNA downstream 453553 39057038 ~ 39068138 (+) True LOC110499463
XM_036956326.1 mRNA downstream 507405 39110890 ~ 39118850 (+) False plaub
TU1935683 other upstream 33646 38568269 ~ 38569446 (+) True G1692406
TU1935201 other upstream 374541 38228015 ~ 38228551 (+) True G1691992
TU1935199 other upstream 380357 38222505 ~ 38222735 (+) True G1691990
TU1934415 other upstream 794031 37804543 ~ 37809061 (+) True G1691267
TU1934332 other upstream 949028 37650626 ~ 37654064 (+) True G1691189
TU1935894 other downstream 107466 38710951 ~ 38712291 (+) True G1692568
TU1936048 other downstream 236449 38839934 ~ 38840271 (+) True G1692702
TU1936590 other downstream 752860 39356345 ~ 39359635 (+) False G1693184
TU1937209 other downstream 1277864 39881349 ~ 39881843 (+) True G1693699
TU1937210 other downstream 1278473 39881958 ~ 39882625 (+) True G1693700

Expression Profile