RNA id: TU1935708


Basic Information

Item Value
RNA id TU1935708
length 1758
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1692428
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 38643523 ~ 38645620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGAGCTGGAGGGCAGTGCTATATTTATCCTCTCTGTTCCTGAACTGAGCTGAACCCTCCTGGAAGATACTAAGACCAGTCatgtctgccacacacacacacacacaggctctccCAGGGAGCCAGACGTGCATGATGGAAGGATGatttcctgcctctctctcgtgtGTGGGTTGGTCGGTCTGTGTGGGTTGGTCGGTGTGTGTTCAAGTCGGTGGTTCTATTTGCGTGCTCATTAGTAGTACCCACCTGCTGTTGAAATCGTCACCCAGGGTTTGTCATCGTGGCAGGACGTCACAGTGGAAAATATGTCCAGTCAACTATCCATCCTCACGTGTGTTGTCATATCCCACTGTCTGATTCTTCCAGGTTTCTGACTTATCGCATTTAGTTTTTCCCAGCTGTGTATTTTGGGACTTTGTATTGGTAAAACGGGAATTCTTCTTTCGGGAATTGGAGAGTCGGTTATTAATTTTAAAAAGTCACAGGTCACAGGTCACAGGTAGGGATGAGTCATTGTCTGAAAAGTGGAAAGCTAAGAATCATAGGATGCTGTTTTTGTCGCCAtcgtcctcatcctcttccttctCATGGCTGATAAAACCAGTGACATGATGACTTCCCATCCAAACTGGAAATGAAAACGTCTTTGTCAGTTTGTACTTTCCCCATTGTTAATGTTAGTTTCTGGAATACAGCTGTTGTCTTCGCTACTCTTTTCAGAAGCTGTACATTTAGTCGAATTGCTGTTCTATTATGCATTTACCAGACTATATCAAGTGtaaatgtgttgtgtttgtgaAGTGTGTGAAAACGATGCTTTTGTTTTCACACATTATTGCAAAAATATTTTTGCTTAAATGTTCTTTGTTAAGGTGAGCTGTGTAGCCATCACACTCACTTTGTTAAACTGAGCTGTGTAGCCATCTTTGTTACGGTGAGCTGTGTAGCCCTCACACTCACTTTGTTAAGGTGAGCTGTGTAGCCATCTTTGTTAAGCTGAGCTGTGTAGCCACCAGACTCACTTTGTTAAGCTGAGCTGTGCAGCCATCTTTGTTACGGTGAGCTGTGTAGCCATCACACTCACTTTGTTAAGGTGAGCTGTGTAGCCATCTTTGTTAAGCTGAGCTGTGTAGCCATCTTTGTTAAGCTGAGCTGTGTAGCCATCACACTCACTTTGTTGGAATATGGAAACCTTCGGAGCTTAGTGTCTCTGTGGTCAATGTTTACCAGGCTGCAGGTACAGAACGTGCAGCTGTGCTTGACTTGTGTTGTGCTCTTTTGTGGGGGATCCGATTTCAAGCCAGGCTTGTGTTTTGGTGGGAGTGGGCTGATGTGAATgcagtggggagggagggtggatgaGTCCATATTGTCACTGGCTGACTGGTTTCGGGAAAATACATTGGCAGAGATTGCTTCAAATGCTACCGTAAGTGAAATGGAGAAGAGCGAGGAGGCATATATGCTATTCTATGTTGGGTGGGTGGGCCGGGTTACCGTGGCAACATATCGTGGTGACCACTGCCTTGGGGGGGAAGTGAAGTTCTCAGTACATTTACACATTGATCTCTTTAAAgcttctgatttaaaaaaaaaaaaaaaagactgatGACTGTTTGCTTCTTAGAGCTAAATGAATTtctattaaatatatatataaaaaaaaaagattgctcAAACTGATTGTGTGCAATTGTAATGATGGAAATTCAATAAAAAAGGTATTTTTACacaataattgtgtgtgtgtgtgtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1935703 lncRNA upstream 5374 38637192 ~ 38638149 (+) True LOC110499544
TU1935706 lncRNA upstream 6403 38635860 ~ 38637120 (+) False LOC110499544
TU1935707 lncRNA upstream 6403 38636616 ~ 38637120 (+) False LOC110499544
TU1935722 lncRNA upstream 40038 38603092 ~ 38603485 (+) True G1692440
TU1935700 lncRNA upstream 64468 38578816 ~ 38579055 (+) True G1692423
TU1935739 lncRNA downstream 1277 38646897 ~ 38647109 (+) True G1692456
TU1935742 lncRNA downstream 5470 38651090 ~ 38651301 (+) True G1692459
TU1935743 lncRNA downstream 6787 38652407 ~ 38652646 (+) True G1692460
TU1935745 lncRNA downstream 8452 38654072 ~ 38654310 (+) True G1692462
TU1935746 lncRNA downstream 8939 38654559 ~ 38654768 (+) True G1692463
XM_036955563.1 mRNA upstream 2874 38639595 ~ 38640649 (+) True LOC118942016
XM_036956317.1 mRNA upstream 4751 38594819 ~ 38638772 (+) False LOC110499544
XM_036956318.1 mRNA upstream 4751 38607871 ~ 38638772 (+) False LOC110499544
XR_005038003.1 mRNA upstream 49218 38580735 ~ 38594305 (+) True LOC110499600
XM_036956302.1 mRNA upstream 439553 38083895 ~ 38203970 (+) False LOC110499447
XM_021576600.2 mRNA downstream 411416 39057036 ~ 39068138 (+) False LOC110499463
XM_021576601.2 mRNA downstream 411418 39057038 ~ 39068138 (+) True LOC110499463
XM_036956326.1 mRNA downstream 465270 39110890 ~ 39118850 (+) False plaub
XM_036956327.1 mRNA downstream 465270 39110890 ~ 39118850 (+) True plaub
XM_036956328.1 mRNA downstream 478458 39124078 ~ 39196200 (+) False LOC110499465
TU1935683 other upstream 74077 38568269 ~ 38569446 (+) True G1692406
TU1935201 other upstream 414972 38228015 ~ 38228551 (+) True G1691992
TU1935199 other upstream 420788 38222505 ~ 38222735 (+) True G1691990
TU1934415 other upstream 834462 37804543 ~ 37809061 (+) True G1691267
TU1934332 other upstream 989459 37650626 ~ 37654064 (+) True G1691189
TU1935894 other downstream 65331 38710951 ~ 38712291 (+) True G1692568
TU1936048 other downstream 194314 38839934 ~ 38840271 (+) True G1692702
TU1936590 other downstream 710725 39356345 ~ 39359635 (+) False G1693184
TU1937209 other downstream 1235729 39881349 ~ 39881843 (+) True G1693699
TU1937210 other downstream 1236338 39881958 ~ 39882625 (+) True G1693700

Expression Profile