RNA id: TCONS_00004769


Basic Information

Item Value
RNA id TCONS_00004769
length 1033
RNA type unprocessed_pseudogene
GC content 0.56
exon number 7
gene id XLOC_002564
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6677673 ~ 6679486 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttggaggagattttccatgtcccacatgggtgaagaaagaggagCCATTCCAGACCCAGGAGTGCTGCTTTCACCCAGACAGCAGCTCTGGACACAGACACACAGGACGGCACCGCTGAGCTTCCTGGATATTTTCTCCTCTGCCTTCACATTTGGCTgattctgcatccacagaccagaggaacagcaagaggaaaaggcaAAGCAGCAGCCAGCAAACACCGTCCACCTCTTCCCAGAGACCggccaaacgctctcgcagaggcttgtacctgaagggcccgttgctgggacgaggtggattcggctctgGGTTTGCTGGGGtccgcaggtctgatggactaCCAGTGGACATCAAGTACGTGTCGAAGGACCGGACCCCCGAGAGACTGATAGTTgacggtcagggtcggctgccgctggaggtggcattAAAGACCCACATCACTTCAGCTCTtgcctgccccagtgtcctgcagctgctggactggtttgaccgtcccagacgGTACGTCTTGATCCTGGAGCGTCCGGCTCCTTGCCAAAATCTCCAGGGCTTCTGTGAGAACGGCTGTCTGGACGAGCGTCTGGCTAAGgaagtgctggtgcagctgatcgTGGCACTGAAACACTTCGAGAACCACGGCATTCTGCACTGGGACATCAAGCCAGAGAACCTACTGATCTtcacagagtcccaggacatcaagctgctggacttcagctgtggagatctgctgaagcgctcggcctacaaatactttgcaggcactcctgcatTCGCTCCTCCTGAGTGGTTTAGCAGACATCGCTACAATGCCACTCCAGctacagtctggtcagtaggagtgacgctctacaacatcctgtgtgacTGTTTCCCCTTCAGAGGCACATagagggtcacgtccagaagcagactgacctttcctaggagcttgtcaacagtgccgtcagctgattcgctggtgtctcagtgcagcgCCGGCTGATCGGTCCAGTTTAGATGATCTTGAGCGCCATCCCTGGTTA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000149621

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005993 lncRNA downstream 66608 6610157 ~ 6611065 (-) True XLOC_002561
TCONS_00004764 lncRNA downstream 100208 6572938 ~ 6577465 (-) True XLOC_002560
TCONS_00005992 lncRNA downstream 267876 6389269 ~ 6409797 (-) True XLOC_002556
TCONS_00005991 lncRNA downstream 639927 6036881 ~ 6037746 (-) True XLOC_002555
TCONS_00005990 lncRNA downstream 822548 5854634 ~ 5855125 (-) True XLOC_002552
TCONS_00005994 lncRNA upstream 14028 6693514 ~ 6695332 (-) False XLOC_002565
TCONS_00004778 lncRNA upstream 107022 6786508 ~ 6831282 (-) True XLOC_002568
TCONS_00005995 lncRNA upstream 370839 7050325 ~ 7061537 (-) True XLOC_002571
TCONS_00005996 lncRNA upstream 558758 7238244 ~ 7253898 (-) True XLOC_002572
TCONS_00004792 lncRNA upstream 944602 7624088 ~ 7636323 (-) True XLOC_002576
TCONS_00004762 mRNA downstream 88880 6521376 ~ 6588793 (-) False XLOC_002560
TCONS_00004763 mRNA downstream 90607 6522567 ~ 6587066 (-) False XLOC_002560
TCONS_00004761 mRNA downstream 183603 6473092 ~ 6494070 (-) True XLOC_002559
TCONS_00004758 mRNA downstream 223287 6417356 ~ 6454386 (-) False XLOC_002557
TCONS_00004757 mRNA downstream 250311 6417356 ~ 6427362 (-) False XLOC_002557
TCONS_00004772 mRNA upstream 85623 6765109 ~ 6775271 (-) True XLOC_002567
TCONS_00004773 mRNA upstream 101637 6781123 ~ 6867282 (-) False XLOC_002568
TCONS_00004774 mRNA upstream 103021 6782507 ~ 6867282 (-) False XLOC_002568
TCONS_00004779 mRNA upstream 287807 6967293 ~ 6976645 (-) True XLOC_002569
TCONS_00004781 mRNA upstream 604635 7284121 ~ 7386475 (-) False XLOC_002573
TCONS_00004768 other downstream 14805 6661059 ~ 6662868 (-) True XLOC_002563
TCONS_00004767 other downstream 38506 6637730 ~ 6639167 (-) True XLOC_002562
TCONS_00004765 other downstream 39438 6611075 ~ 6638235 (-) False XLOC_002562
TCONS_00004766 other downstream 54269 6622569 ~ 6623404 (-) False XLOC_002562
TCONS_00004760 other downstream 204841 6472706 ~ 6472832 (-) True XLOC_002558
TCONS_00004770 other upstream 14032 6693518 ~ 6695332 (-) True XLOC_002565
TCONS_00004771 other upstream 46171 6725657 ~ 6727114 (-) True XLOC_002566
TCONS_00004775 other upstream 106843 6786329 ~ 6825122 (-) False XLOC_002568
TCONS_00004776 other upstream 106847 6786333 ~ 6816766 (-) False XLOC_002568
TCONS_00004777 other upstream 107022 6786508 ~ 6816694 (-) False XLOC_002568

Expression Profile

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