RNA id: TU1936048


Basic Information

Item Value
RNA id TU1936048
length 338
RNA type TUCP
GC content 0.55
exon number 1
gene id G1692702
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 38839934 ~ 38840271 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cgaagaacgggcttgatacaggagacatggaagaccgggtggacgcgacgaaggtatcgcggaagaagaagtcgaactgcgacaggattaatgacccgagaaatacggaacggaccaatgaaccgcggggtcaacttgcaagaagccgtcttaaggggaaggttctgagtggagagccaaactctctgaccgcgacaatatctaggactcttagttctacgcttattagcagccctcacagtctgcgtcctataacggcaaagtgcagacctgaccctcttccaggtgcgctcgcaacgttggacaaaagcctgagcggaggggacgctggactcggc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1936009 lncRNA upstream 33227 38806444 ~ 38806707 (+) True G1692673
TU1935985 lncRNA upstream 47302 38792352 ~ 38792632 (+) True G1692649
TU1935983 lncRNA upstream 48648 38791082 ~ 38791286 (+) True G1692647
TU1935961 lncRNA upstream 76446 38763248 ~ 38763488 (+) True G1692625
TU1935902 lncRNA upstream 123077 38716655 ~ 38716857 (+) True G1692572
TU1936050 lncRNA downstream 3563 38843834 ~ 38844276 (+) True G1692704
TU1936060 lncRNA downstream 11982 38852253 ~ 38852458 (+) True G1692714
TU1936067 lncRNA downstream 14517 38854788 ~ 38855009 (+) True G1692721
TU1936078 lncRNA downstream 20039 38860310 ~ 38860606 (+) True G1692732
TU1936079 lncRNA downstream 20622 38860893 ~ 38861177 (+) True G1692733
XM_036955563.1 mRNA upstream 199285 38639595 ~ 38640649 (+) True LOC118942016
XM_036956317.1 mRNA upstream 201162 38594819 ~ 38638772 (+) False LOC110499544
XM_036956318.1 mRNA upstream 201162 38607871 ~ 38638772 (+) False LOC110499544
XR_005038003.1 mRNA upstream 245629 38580735 ~ 38594305 (+) True LOC110499600
XM_036956305.1 mRNA upstream 635964 38083896 ~ 38203970 (+) True LOC110499447
XM_021576600.2 mRNA downstream 216765 39057036 ~ 39068138 (+) False LOC110499463
XM_021576601.2 mRNA downstream 216767 39057038 ~ 39068138 (+) True LOC110499463
XM_036956326.1 mRNA downstream 270619 39110890 ~ 39118850 (+) False plaub
XM_036956327.1 mRNA downstream 270619 39110890 ~ 39118850 (+) True plaub
XM_036956328.1 mRNA downstream 283807 39124078 ~ 39196200 (+) False LOC110499465
TU1935894 other upstream 127643 38710951 ~ 38712291 (+) True G1692568
TU1935683 other upstream 270488 38568269 ~ 38569446 (+) True G1692406
TU1935201 other upstream 611383 38228015 ~ 38228551 (+) True G1691992
TU1935199 other upstream 617199 38222505 ~ 38222735 (+) True G1691990
TU1934415 other upstream 1030873 37804543 ~ 37809061 (+) True G1691267
TU1936590 other downstream 516074 39356345 ~ 39359635 (+) False G1693184
TU1937209 other downstream 1041078 39881349 ~ 39881843 (+) True G1693699
TU1937210 other downstream 1041687 39881958 ~ 39882625 (+) True G1693700
TU1937449 other downstream 1371251 40211522 ~ 40212953 (+) True G1693914
TU1938999 other downstream 2777756 41618027 ~ 41618505 (+) True G1695272

Expression Profile