RNA id: TU1936329


Basic Information

Item Value
RNA id TU1936329
length 301
lncRNA type intronic
GC content 0.38
exon number 2
gene id G1692957
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 38985103 ~ 38985648 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACCCAAGCCAAGGACAAATCGTCTTAAACATACAGTTGTATATAGAGCCATAGCTGAacggaactctttaccaatccatatttctagctgaatggaactctttaccaatccatatttctcagccaAAATGTAAATCCACCTTCGAGAAAAAAATgtaagaacatctaatgtgacagACCATGTGACTGGACAGGAAgtagaacatctaatgtgatagaccatatgactggacaggaaattgaaagaacatctaatgtgacagaccatatgactggacaggaaattgAAAgtacatctaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1936322 lncRNA downstream 16427 38967418 ~ 38968676 (-) True G1692951
TU1936321 lncRNA downstream 23394 38961450 ~ 38961709 (-) True G1692950
TU1936320 lncRNA downstream 23753 38961108 ~ 38961350 (-) True G1692949
TU1936308 lncRNA downstream 48290 38936467 ~ 38936813 (-) True G1692937
TU1936304 lncRNA downstream 54001 38930881 ~ 38931102 (-) True G1692934
TU1936347 lncRNA upstream 25330 39010978 ~ 39011648 (-) True G1692967
TU1936349 lncRNA upstream 27800 39013448 ~ 39013987 (-) True G1692969
TU1936364 lncRNA upstream 82536 39068184 ~ 39069100 (-) True G1692977
TU1936402 lncRNA upstream 122396 39108044 ~ 39111247 (-) True G1693013
TU1936411 lncRNA upstream 131635 39117283 ~ 39117780 (-) True G1693021
XM_021576596.2 mRNA downstream 13052 38965588 ~ 38972051 (-) True tvp23b
XM_021576593.2 mRNA downstream 184059 38782027 ~ 38801044 (-) True LOC110499456
XM_021576592.2 mRNA downstream 222502 38753757 ~ 38762601 (-) False kcnj2a
LOC110499599 mRNA downstream 439600 38537839 ~ 38545503 (-) True LOC110499599
XM_036956314.1 mRNA downstream 457129 38515602 ~ 38527974 (-) False LOC110499451
XM_036956321.1 mRNA upstream 21138 39006786 ~ 39026027 (-) True LOC110499458
XR_005038004.1 mRNA upstream 46368 39032016 ~ 39055082 (-) False LOC110499462
XM_021576598.2 mRNA upstream 47922 39033570 ~ 39055082 (-) True LOC110499462
XM_036956323.1 mRNA upstream 84395 39070043 ~ 39101170 (-) False LOC110499545
XM_036956324.1 mRNA upstream 84395 39070043 ~ 39101170 (-) False LOC110499545
TU1935682 other downstream 416914 38567380 ~ 38568189 (-) True G1692405
TU1935564 other downstream 493063 38489550 ~ 38492040 (-) True oxld1
TU1935552 other downstream 499741 38482895 ~ 38485362 (-) True G1692288
TU1934589 other downstream 1745793 37238827 ~ 37239310 (-) True G1691432
TU1933942 other downstream 2088897 36893547 ~ 36896206 (-) True LOC110499438
TU1936328 other upstream 18152 39003800 ~ 39004440 (-) True LOC110499457
TU1936358 other upstream 88430 39074078 ~ 39074834 (-) True LOC110499545
TU1936491 other upstream 278653 39264301 ~ 39264691 (-) True G1693092
TU1936860 other upstream 477782 39463430 ~ 39490078 (-) True G1693393
TU1936964 other upstream 627709 39613357 ~ 39614826 (-) True G1693485

Expression Profile