RNA id: TCONS_00005994


Basic Information

Item Value
RNA id TCONS_00005994
length 1019
lncRNA type inter_gene
GC content 0.57
exon number 8
gene id XLOC_002565
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 6693514 ~ 6695332 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gttggaggagattgtccatgtcccacatgggtgaagaaagaggagcCTCAAGCCATTCCAGACCCAGGAGTGCTGCTTTCACCCAGACAGCAGCTCTGGACACAGACACACAGGACGGCACCGCTGAGCTTCCTGGATATTTTCTCCTCTGCCTTCACATTTGGCTgattctgcatccacagaccagaggaacagcaagaggaaaaggcaAAGCAGCAGCCAGCAAACACCGTCCACCTCTTCCCAGAGACCggccaaacgctctcgcagagggcccgttgctggggcgaggtggattcggctctgtgtttgctgggttccgcaggtctgatggactgccaGTGGACATCAAGTACATGTTGAAGGACCGGACCCCCGAGACactgaaagttgacggtcagggtcggctgccgctggaggtggcatctcctgcctgccccagtgtcctgcagctgctggactggtttgaccgtcccagacgGTACGTCTTGATCCTGGAGCGTCCGGCTCCTTCCCAAAatctccagagcttctgtgaggagaacggctgtctggacGAGCGTCTGGCTAAGgaagtgctggtgcagctgatcgcgGCACTGAAACACTGCGAGAACCACGGCATTCTGCACCGGGACATCAAGCCAGAGAACCTGCTaatctccacagagtcccaggacatcaagctgctggacttcggctgtgggGATTTGCTGAAgcgctcggcctacaaatactttgcaggcactcctgcatTCGCTCCTCCTGAGTGGTTTAGCAGACATCACAACAATACCACTCCAGctacagtctggtcagtaggagtgacgctctacaacatcctgtgtgaccGTTTCCCCTTCAGAGGCGCACACAGGGTCATGTCCAGAAGCAGACTGACCTTCCCTCGGAGCTTGTCAAaagagtgccgtcagctgattcgctggtgtctcagtgcagcgTCGGCTGATCGGCCCAGTTTAGATGATCTTGAGCGCCTTCCCTGGTTACACTGGACA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0007492 endoderm development biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0097028 dendritic cell differentiation biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005993 lncRNA downstream 82449 6610157 ~ 6611065 (-) True XLOC_002561
TCONS_00004764 lncRNA downstream 116049 6572938 ~ 6577465 (-) True XLOC_002560
TCONS_00005992 lncRNA downstream 283717 6389269 ~ 6409797 (-) True XLOC_002556
TCONS_00005991 lncRNA downstream 655768 6036881 ~ 6037746 (-) True XLOC_002555
TCONS_00005990 lncRNA downstream 838389 5854634 ~ 5855125 (-) True XLOC_002552
TCONS_00004778 lncRNA upstream 91176 6786508 ~ 6831282 (-) True XLOC_002568
TCONS_00005995 lncRNA upstream 354993 7050325 ~ 7061537 (-) True XLOC_002571
TCONS_00005996 lncRNA upstream 542912 7238244 ~ 7253898 (-) True XLOC_002572
TCONS_00004792 lncRNA upstream 928756 7624088 ~ 7636323 (-) True XLOC_002576
TCONS_00004803 lncRNA upstream 1084306 7779638 ~ 7782022 (-) True XLOC_002582
TCONS_00004762 mRNA downstream 104721 6521376 ~ 6588793 (-) False XLOC_002560
TCONS_00004763 mRNA downstream 106448 6522567 ~ 6587066 (-) False XLOC_002560
TCONS_00004761 mRNA downstream 199444 6473092 ~ 6494070 (-) True XLOC_002559
TCONS_00004758 mRNA downstream 239128 6417356 ~ 6454386 (-) False XLOC_002557
TCONS_00004757 mRNA downstream 266152 6417356 ~ 6427362 (-) False XLOC_002557
TCONS_00004772 mRNA upstream 69777 6765109 ~ 6775271 (-) True XLOC_002567
TCONS_00004773 mRNA upstream 85791 6781123 ~ 6867282 (-) False XLOC_002568
TCONS_00004774 mRNA upstream 87175 6782507 ~ 6867282 (-) False XLOC_002568
TCONS_00004779 mRNA upstream 271961 6967293 ~ 6976645 (-) True XLOC_002569
TCONS_00004781 mRNA upstream 588789 7284121 ~ 7386475 (-) False XLOC_002573
TCONS_00004769 other downstream 14028 6677673 ~ 6679486 (-) True XLOC_002564
TCONS_00004768 other downstream 30646 6661059 ~ 6662868 (-) True XLOC_002563
TCONS_00004767 other downstream 54347 6637730 ~ 6639167 (-) True XLOC_002562
TCONS_00004765 other downstream 55279 6611075 ~ 6638235 (-) False XLOC_002562
TCONS_00004766 other downstream 70110 6622569 ~ 6623404 (-) False XLOC_002562
TCONS_00004771 other upstream 30325 6725657 ~ 6727114 (-) True XLOC_002566
TCONS_00004775 other upstream 90997 6786329 ~ 6825122 (-) False XLOC_002568
TCONS_00004776 other upstream 91001 6786333 ~ 6816766 (-) False XLOC_002568
TCONS_00004777 other upstream 91176 6786508 ~ 6816694 (-) False XLOC_002568
TCONS_00004780 other upstream 314042 7009374 ~ 7009490 (-) True XLOC_002570

Expression Profile

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