RNA id: TU1938327



Basic Information


Item Value
RNA id TU1938327
length 240
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1694660
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 40937820 ~ 40938059 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


AGTCTGACCAGGTCTACAGTCTGACCAGGTCTACAGTCTGGATAGGTCTACAGTCTGGTCAGGTCTACAGTCTAAACAGGTCTACAGTCTGGTCAGGTCTACAATCTGGATAGGTCTACAGTCTAATCAGGTCTACAGTCTAATCAGGTCTACAGTCTGACCAGGTCTACAGTCTGGTCAGGTCTACAGGAGCACATCTAGTCCTGGTCACCACAGGGTCGTGGACCTCCAGGACTCATC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1938315 lncRNA upstream 13521 40924076 ~ 40924299 (+) True G1694648
TU1938309 lncRNA upstream 17779 40919812 ~ 40920041 (+) True G1694643
TU1938303 lncRNA upstream 21317 40916267 ~ 40916503 (+) True G1694637
TU1938297 lncRNA upstream 25922 40911664 ~ 40911898 (+) True G1694631
TU1938287 lncRNA upstream 31412 40906148 ~ 40906408 (+) True G1694621
TU1938329 lncRNA downstream 3115 40941174 ~ 40941385 (+) True G1694662
TU1938330 lncRNA downstream 3516 40941575 ~ 40942033 (+) True G1694663
TU1938350 lncRNA downstream 25842 40963901 ~ 40964123 (+) True G1694681
TU1938388 lncRNA downstream 74445 41012504 ~ 41013984 (+) False G1694714
TU1938386 lncRNA downstream 74743 41012802 ~ 41013984 (+) False G1694714
XM_036956354.1 mRNA upstream 350238 40525993 ~ 40587582 (+) False LOC110499549
XM_036955566.1 mRNA downstream 750076 41688135 ~ 41696129 (+) True LOC118942019
XM_036956358.1 mRNA downstream 891955 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA downstream 892879 41830938 ~ 41862392 (+) False LOC110499555
XM_036956361.1 mRNA downstream 1235921 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA downstream 1235939 42173998 ~ 42282788 (+) False parga
TU1937449 other upstream 724867 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 1055195 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 1055977 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 1578185 39356345 ~ 39359635 (+) False G1693184
TU1936048 other upstream 2097549 38839934 ~ 38840271 (+) True G1692702
TU1938999 other downstream 679968 41618027 ~ 41618505 (+) True G1695272
TU1939686 other downstream 1571572 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 1584451 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 1584500 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 1841940 42779999 ~ 42780549 (+) True G1696324

Expression Profile