RNA id: TU1938437


Basic Information

Item Value
RNA id TU1938437
length 479
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G1694755
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 41051868 ~ 41053242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtagacagtagacagtaggtagtagacagtagacagtaggtagtagacagtagacagtagacagtagacagtaggtggTAGgtggtagacagtagacagtaggtagTAGACACTAGACAGTTggtagtagacagtagcaggtagtagacagtagacagtaggtggTAAACAGTAGAAAGTAGACAGTAGGTGGTACACAGTAGACAGTAGGTGGTAGACAGTAGAAAGTAGACAGTAGTCAGTAGACAGTGGAAAAAAGGTAGTAGACAGGAGTCATAAGGTGGttgacagtagacagtagtcagtagatggtagacagtagacagtagGTGGTAGACAGTAGTCAGTAGACGGTagtcagtagacagtagacagtagacggTAAACAGTAGATGGTAGACGGTAGACGGTAGACAGTAGAcggtagacagtagacagtagacagaagGTAGTAGGTGGTAGACAGTAGACATTAggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1938388 lncRNA upstream 37884 41012504 ~ 41013984 (+) False G1694714
TU1938386 lncRNA upstream 37884 41012802 ~ 41013984 (+) False G1694714
TU1938387 lncRNA upstream 37884 41013030 ~ 41013984 (+) True G1694714
TU1938350 lncRNA upstream 87745 40963901 ~ 40964123 (+) True G1694681
TU1938330 lncRNA upstream 109835 40941575 ~ 40942033 (+) True G1694663
TU1938448 lncRNA downstream 4642 41057884 ~ 41058147 (+) True G1694762
TU1938555 lncRNA downstream 190767 41244009 ~ 41244895 (+) True G1694864
TU1938558 lncRNA downstream 196791 41250033 ~ 41250463 (+) True G1694867
TU1938590 lncRNA downstream 248431 41301673 ~ 41304433 (+) True G1694895
TU1938592 lncRNA downstream 258300 41311542 ~ 41311974 (+) True G1694897
XM_036956354.1 mRNA upstream 464286 40525993 ~ 40587582 (+) False LOC110499549
XM_036955566.1 mRNA downstream 634893 41688135 ~ 41696129 (+) True LOC118942019
XM_036956358.1 mRNA downstream 776772 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA downstream 777696 41830938 ~ 41862392 (+) False LOC110499555
XM_036956361.1 mRNA downstream 1120738 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA downstream 1120756 42173998 ~ 42282788 (+) False parga
TU1937449 other upstream 838915 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 1169243 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 1170025 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 1692233 39356345 ~ 39359635 (+) False G1693184
TU1936048 other upstream 2211597 38839934 ~ 38840271 (+) True G1692702
TU1938999 other downstream 564785 41618027 ~ 41618505 (+) True G1695272
TU1939686 other downstream 1456389 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 1469268 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 1469317 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 1726757 42779999 ~ 42780549 (+) True G1696324

Expression Profile