RNA id: TU1938590


Basic Information

Item Value
RNA id TU1938590
length 368
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G1694895
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 41301673 ~ 41304433 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tttctatgttttggttggtcagggtgtgagctgagtgggcattctatgttacatgtctagtttgtctagttctatgtttggcctgatatggttctcaatcagaggcaggtgttcgtcattgtctctgattgggaaccatatttaggtagcctgtttggtgttgggttttgtgggtgattgtccttagtgtcctgatgtccttgttctgtgttagtttacacaagtataggctgtttcggttttcgttacgtttattgttttggtagtgtttgtgtttagtgtgtttcttcattaaacatggatcgcaatagacacgctgcattttggtccgactctccttcacacctagaaaaccgtgacaTATACGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1938558 lncRNA upstream 51210 41250033 ~ 41250463 (+) True G1694867
TU1938555 lncRNA upstream 56778 41244009 ~ 41244895 (+) True G1694864
TU1938448 lncRNA upstream 243526 41057884 ~ 41058147 (+) True G1694762
TU1938437 lncRNA upstream 248431 41051868 ~ 41053242 (+) True G1694755
TU1938386 lncRNA upstream 287689 41012802 ~ 41013984 (+) False G1694714
TU1938592 lncRNA downstream 7109 41311542 ~ 41311974 (+) True G1694897
TU1938593 lncRNA downstream 16846 41321279 ~ 41321576 (+) True G1694898
TU1938894 lncRNA downstream 153686 41458119 ~ 41458352 (+) True G1695177
TU1938898 lncRNA downstream 163989 41468422 ~ 41468660 (+) True G1695181
TU1938922 lncRNA downstream 181427 41485860 ~ 41486322 (+) True G1695199
XM_036956354.1 mRNA upstream 714091 40525993 ~ 40587582 (+) False LOC110499549
XM_036955566.1 mRNA downstream 383702 41688135 ~ 41696129 (+) True LOC118942019
XM_036956358.1 mRNA downstream 525581 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA downstream 526505 41830938 ~ 41862392 (+) False LOC110499555
XM_036956361.1 mRNA downstream 869547 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA downstream 869565 42173998 ~ 42282788 (+) False parga
TU1937449 other upstream 1088720 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 1419048 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 1419830 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 1942038 39356345 ~ 39359635 (+) False G1693184
TU1936048 other upstream 2461402 38839934 ~ 38840271 (+) True G1692702
TU1938999 other downstream 313594 41618027 ~ 41618505 (+) True G1695272
TU1939686 other downstream 1205198 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 1218077 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 1218126 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 1475566 42779999 ~ 42780549 (+) True G1696324

Expression Profile