RNA id: TU1938922


Basic Information

Item Value
RNA id TU1938922
length 249
lncRNA type inter_gene
GC content 0.48
exon number 2
gene id G1695199
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 41485860 ~ 41486322 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actcttactggggtttattatggatccccattagttcctgtcaaggcagcagctactcttcctggggtttattatggatccccagtagttcctgccaaggcagcagctactcttactggggtttattatggatccccattagttcctgcaccaaggcagcagctactcttcctggggtttattatggatccccattagttcctgtcaaggcagcagctactcttcctggggtttattatggatcaccat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1938898 lncRNA upstream 17200 41468422 ~ 41468660 (+) True G1695181
TU1938894 lncRNA upstream 27508 41458119 ~ 41458352 (+) True G1695177
TU1938593 lncRNA upstream 164284 41321279 ~ 41321576 (+) True G1694898
TU1938592 lncRNA upstream 173886 41311542 ~ 41311974 (+) True G1694897
TU1938590 lncRNA upstream 181427 41301673 ~ 41304433 (+) True G1694895
TU1939082 lncRNA downstream 165319 41651641 ~ 41651931 (+) True G1695339
TU1939090 lncRNA downstream 174584 41660906 ~ 41661199 (+) True G1695347
TU1939123 lncRNA downstream 211027 41697349 ~ 41697768 (+) True G1695367
TU1939105 lncRNA downstream 218982 41705304 ~ 41724940 (+) False G1695357
TU1939106 lncRNA downstream 218982 41705304 ~ 41727472 (+) False G1695357
XM_036956354.1 mRNA upstream 898278 40525993 ~ 40587582 (+) False LOC110499549
XM_036955566.1 mRNA downstream 201813 41688135 ~ 41696129 (+) True LOC118942019
XM_036956358.1 mRNA downstream 343692 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA downstream 344616 41830938 ~ 41862392 (+) False LOC110499555
XM_036956361.1 mRNA downstream 687658 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA downstream 687676 42173998 ~ 42282788 (+) False parga
TU1937449 other upstream 1272907 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 1603235 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 1604017 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2126225 39356345 ~ 39359635 (+) False G1693184
TU1936048 other upstream 2645589 38839934 ~ 38840271 (+) True G1692702
TU1938999 other downstream 131705 41618027 ~ 41618505 (+) True G1695272
TU1939686 other downstream 1023309 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 1036188 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 1036237 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 1293677 42779999 ~ 42780549 (+) True G1696324

Expression Profile