RNA id: TU1939106


Basic Information

Item Value
RNA id TU1939106
length 3647
lncRNA type inter_gene
GC content 0.39
exon number 6
gene id G1695357
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 41705304 ~ 41777461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CcatgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagagagatatacatagaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctggtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctggtgagatatacatggaggaggtttaatatcctgaccaagtgagatatacatggaggaggtttaatatcctgacctggtgagatatacatggaggaggtttaatatcctgagctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcatgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagataaacatggaggtttaatatcctgacctggtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctggtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctggtgagatacacatggaggaggtttaatatcctgacctggtgagatatacatggaggagttttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagataaacatggaggtttaatatcctgacctggtgagatatacatggagaaagtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctggtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctggtgagatacacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgaccttgtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctggtgagatacacatggaggaggtttactatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacatggtgagatatacatggaggaagtTTAATATccagacctagtgagatatacatggaggaggtttaatatcctgaccaagtgagatatacatggaggaggtttaatatcctgacctggtgagatatacatggaggaggtttaatatcctgagctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgatatatatacatggaggaggtttaatatcatgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaatattctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatacacatggaggaggtttaatatcctgacctggtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagataaacatggaggtttaatatcctgacctggtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggaagtttaatatcctgacctagtgagatatacacgGAGGagatttaatatcctgacctggtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctggtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggattTTAATATCATgagctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctggtgagatatatacatggaggaggtttaatatcatgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctggtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggattTTAATATCATgagctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctggtgagatatatacatggaggaggtttaatatcatgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctagtgagataaacatggaggtttaatatcctgacctggtgagatatacatggaggtttaatatcctgacctagtgagatatacatggaggaggtttaatatcctgacctggtgagatacacatggaggaggtttaatatcctgacctagtgagataaacatggaggtttaatatcctgacctggtgagatatacatggatgtttaatatcctgacctagtgagatatacatggaggaggtgtaatatcctgacctggtgagatacacatggaggaggtttaatatcctgacctggtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaaaatcctgacctagtgagataaacatggaggaggtttaatatcctgacctggtgagatatacatggaggaggtttaatatcctgacctagtgagataaacatggaggtttaatatcctgacctggtgagatatacatggaggaggtttaatatcctctcctagtgagatatacatggaggaggtttaatatcctgacctagtgagatatacatggaggaggtttaataccctaacctagtgagatatacatggaggaggctcAATCAAGCTATTCGTCTCGACTACTGTCTTATGTCATTCATTCTTGTGTCACCAAAAGTTTTAAAAAGTGTTGCTAGGGGACAGAACACAGCCGGACcatcaaataaaaatacatgtccTTTACTCTTTCggaatttccacgtgggcgaggatgttggaaatttaatcaaagcctattggatAACATCTTGTTTTTAACCAGGACAGAATcatttataactgacttttttcagacataacata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939123 lncRNA upstream 7536 41697349 ~ 41697768 (+) True G1695367
TU1939090 lncRNA upstream 44105 41660906 ~ 41661199 (+) True G1695347
TU1939082 lncRNA upstream 53373 41651641 ~ 41651931 (+) True G1695339
TU1938922 lncRNA upstream 218982 41485860 ~ 41486322 (+) True G1695199
TU1938898 lncRNA upstream 236644 41468422 ~ 41468660 (+) True G1695181
TU1939146 lncRNA downstream 36745 41764217 ~ 41769233 (+) True G1695384
TU1939249 lncRNA downstream 102604 41830076 ~ 41858242 (+) True LOC110499555
TU1939328 lncRNA downstream 174876 41902348 ~ 41902722 (+) True G1695538
TU1939339 lncRNA downstream 197953 41925425 ~ 41926038 (+) True G1695549
TU1939373 lncRNA downstream 218743 41946215 ~ 41946440 (+) True G1695581
XM_036955566.1 mRNA upstream 9175 41688135 ~ 41696129 (+) True LOC118942019
XM_036956356.1 mRNA upstream 1117722 40525993 ~ 40587582 (+) False LOC110499549
XM_036956358.1 mRNA downstream 102542 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA downstream 103466 41830938 ~ 41862392 (+) False LOC110499555
XM_036956361.1 mRNA downstream 446508 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA downstream 446526 42173998 ~ 42282788 (+) False parga
XM_021576625.2 mRNA downstream 680790 42408262 ~ 42413033 (+) True LOC110499494
TU1938999 other upstream 86799 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 1492351 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 1822679 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 1823461 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2345669 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 782159 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 795038 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 795087 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 1052527 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 1406155 43133627 ~ 43134013 (+) True G1696541

Expression Profile