RNA id: TU1939408


Basic Information

Item Value
RNA id TU1939408
length 277
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G1695615
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 41973891 ~ 41974167 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaggcaccatattccctatatagtgccctactttttaccagagccctatgggaatagggaataaggtgtaatTTGTTAAATGGTCATCACACACCAAAGGGCTGTACTGGGGCCAGTATCACACATCATAAAGCCTAGATATTAATTAACATGAAGTCAGCCATCAGTTTTAGTGGGTGATGCCTTTTTAATTGACAACTTGCTACGACTGATGAATTCAAAAGGTACACGACAGTAGAGGAGGGCGAAGAAGACAAATGAAAGTCAATTAGTttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939383 lncRNA upstream 18235 41955264 ~ 41955656 (+) True G1695590
TU1939373 lncRNA upstream 27451 41946215 ~ 41946440 (+) True G1695581
TU1939339 lncRNA upstream 47853 41925425 ~ 41926038 (+) True G1695549
TU1939328 lncRNA upstream 71169 41902348 ~ 41902722 (+) True G1695538
TU1939249 lncRNA upstream 115649 41830076 ~ 41858242 (+) True LOC110499555
TU1939412 lncRNA downstream 6441 41980608 ~ 41981222 (+) True G1695619
TU1939415 lncRNA downstream 9154 41983321 ~ 41984072 (+) True G1695621
TU1939416 lncRNA downstream 10007 41984174 ~ 41984381 (+) True G1695622
TU1939421 lncRNA downstream 17737 41991904 ~ 41992106 (+) True G1695627
TU1939422 lncRNA downstream 18899 41993066 ~ 41993274 (+) True G1695628
XM_036956358.1 mRNA upstream 111499 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA upstream 111499 41830938 ~ 41862392 (+) False LOC110499555
XM_036955566.1 mRNA upstream 277762 41688135 ~ 41696129 (+) True LOC118942019
XM_036956355.1 mRNA upstream 1386309 40525994 ~ 40587582 (+) False LOC110499549
XM_036956361.1 mRNA downstream 199813 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA downstream 199831 42173998 ~ 42282788 (+) False parga
XM_021576625.2 mRNA downstream 434095 42408262 ~ 42413033 (+) True LOC110499494
XM_021576726.2 mRNA downstream 441928 42416095 ~ 42419081 (+) True LOC110499602
XM_036956365.1 mRNA downstream 510377 42484544 ~ 42510757 (+) False LOC110499605
TU1938999 other upstream 355386 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 1760938 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2091266 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2092048 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2614256 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 535464 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 548343 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 548392 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 805832 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 1159460 43133627 ~ 43134013 (+) True G1696541

Expression Profile