RNA id: TU1939416



Basic Information


Item Value
RNA id TU1939416
length 208
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G1695622
representative True

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 41984174 ~ 41984381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


CCTCCTGTTCCACTTctttgtcctcctcttcctctcctcctcttcccctcaccCCAGCACACCACATCGTAAAGCCTGTTTGTactgtctgcacacacacacacacacacacacacacaactcagctcacacaacacaacacaaaacacaccCACCTCAGAGGTGTTGCCTGGAGCCTCGTCTCTGTCCACTCAGCTTGTTTTTTGGG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1939415 lncRNA upstream 102 41983321 ~ 41984072 (+) True G1695621
TU1939412 lncRNA upstream 2952 41980608 ~ 41981222 (+) True G1695619
TU1939408 lncRNA upstream 10007 41973891 ~ 41974167 (+) True G1695615
TU1939383 lncRNA upstream 28518 41955264 ~ 41955656 (+) True G1695590
TU1939373 lncRNA upstream 37734 41946215 ~ 41946440 (+) True G1695581
TU1939421 lncRNA downstream 7523 41991904 ~ 41992106 (+) True G1695627
TU1939422 lncRNA downstream 8685 41993066 ~ 41993274 (+) True G1695628
TU1939424 lncRNA downstream 12303 41996684 ~ 41997527 (+) True G1695630
TU1939426 lncRNA downstream 19335 42003716 ~ 42004101 (+) True G1695632
TU1939439 lncRNA downstream 51499 42035880 ~ 42036122 (+) True G1695645
XM_036956358.1 mRNA upstream 121782 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA upstream 121782 41830938 ~ 41862392 (+) False LOC110499555
XM_036955566.1 mRNA upstream 288045 41688135 ~ 41696129 (+) True LOC118942019
XM_036956355.1 mRNA upstream 1396592 40525994 ~ 40587582 (+) False LOC110499549
XM_036956361.1 mRNA downstream 189599 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA downstream 189617 42173998 ~ 42282788 (+) False parga
XM_021576625.2 mRNA downstream 423881 42408262 ~ 42413033 (+) True LOC110499494
XM_021576726.2 mRNA downstream 431714 42416095 ~ 42419081 (+) True LOC110499602
XM_036956365.1 mRNA downstream 500163 42484544 ~ 42510757 (+) False LOC110499605
TU1938999 other upstream 365669 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 1771221 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2101549 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2102331 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2624539 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 525250 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 538129 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 538178 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 795618 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 1149246 43133627 ~ 43134013 (+) True G1696541

Expression Profile