RNA id: TU1939439


Basic Information

Item Value
RNA id TU1939439
length 243
lncRNA type inter_gene
GC content 0.53
exon number 1
gene id G1695645
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42035880 ~ 42036122 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cAGACCGGCCAATAAacagaaaagattaagatgggtaaaagaacacggagactggacagaggaactctgcctagaaggccaacatcccggagtcgcctcttcactgttgacgttgagactggacagaggaactctgcctagaaggccagcatcccggagtcgcctcttcactgttgacgttgagactggacagaggaactctgcctagaaggccagcatcctggagtcgcctcttcactgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939426 lncRNA upstream 31779 42003716 ~ 42004101 (+) True G1695632
TU1939424 lncRNA upstream 38353 41996684 ~ 41997527 (+) True G1695630
TU1939422 lncRNA upstream 42606 41993066 ~ 41993274 (+) True G1695628
TU1939421 lncRNA upstream 43774 41991904 ~ 41992106 (+) True G1695627
TU1939416 lncRNA upstream 51499 41984174 ~ 41984381 (+) True G1695622
TU1939460 lncRNA downstream 65199 42101321 ~ 42101598 (+) True G1695664
TU1939461 lncRNA downstream 68130 42104252 ~ 42104462 (+) True G1695665
TU1939465 lncRNA downstream 76405 42112527 ~ 42118839 (+) True G1695669
TU1939468 lncRNA downstream 86104 42122226 ~ 42122720 (+) True G1695672
TU1939473 lncRNA downstream 88466 42124588 ~ 42124909 (+) True G1695674
XM_036956358.1 mRNA upstream 173488 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA upstream 173488 41830938 ~ 41862392 (+) False LOC110499555
XM_036955566.1 mRNA upstream 339751 41688135 ~ 41696129 (+) True LOC118942019
XM_036956355.1 mRNA upstream 1448298 40525994 ~ 40587582 (+) False LOC110499549
XM_036956361.1 mRNA downstream 137858 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA downstream 137876 42173998 ~ 42282788 (+) False parga
XM_021576625.2 mRNA downstream 372140 42408262 ~ 42413033 (+) True LOC110499494
XM_021576726.2 mRNA downstream 379973 42416095 ~ 42419081 (+) True LOC110499602
XM_036956365.1 mRNA downstream 448422 42484544 ~ 42510757 (+) False LOC110499605
TU1938999 other upstream 417375 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 1822927 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2153255 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2154037 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2676245 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 473509 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 486388 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 486437 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 743877 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 1097505 43133627 ~ 43134013 (+) True G1696541

Expression Profile