RNA id: TU1939460


Basic Information

Item Value
RNA id TU1939460
length 278
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1695664
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42101321 ~ 42101598 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattgaaccctgtggcacccccatagagactgccagaggaccggacagcatgccctccgatttgacacactgaactctgtctgcaaagtagttggtgaaccaggcaaagcagtcatcagaaaaaccgaggctactgagtctgctgataagaatatggtgattgacagagtcgaaagccttggcaaggtcgatgaagacggctgcacagtactgtcttttatcgatggcggttatgatatcgtttagtaccttgagcgtggctgaggtgcacccgtgac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939439 lncRNA upstream 65199 42035880 ~ 42036122 (+) True G1695645
TU1939426 lncRNA upstream 97220 42003716 ~ 42004101 (+) True G1695632
TU1939424 lncRNA upstream 103794 41996684 ~ 41997527 (+) True G1695630
TU1939422 lncRNA upstream 108047 41993066 ~ 41993274 (+) True G1695628
TU1939421 lncRNA upstream 109215 41991904 ~ 41992106 (+) True G1695627
TU1939461 lncRNA downstream 2654 42104252 ~ 42104462 (+) True G1695665
TU1939465 lncRNA downstream 10929 42112527 ~ 42118839 (+) True G1695669
TU1939468 lncRNA downstream 20628 42122226 ~ 42122720 (+) True G1695672
TU1939473 lncRNA downstream 22990 42124588 ~ 42124909 (+) True G1695674
TU1939474 lncRNA downstream 24019 42125617 ~ 42125922 (+) True G1695675
XM_036956358.1 mRNA upstream 238929 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA upstream 238929 41830938 ~ 41862392 (+) False LOC110499555
XM_036955566.1 mRNA upstream 405192 41688135 ~ 41696129 (+) True LOC118942019
XM_036956355.1 mRNA upstream 1513739 40525994 ~ 40587582 (+) False LOC110499549
XM_036956361.1 mRNA downstream 72382 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA downstream 72400 42173998 ~ 42282788 (+) False parga
XM_021576625.2 mRNA downstream 306664 42408262 ~ 42413033 (+) True LOC110499494
XM_021576726.2 mRNA downstream 314497 42416095 ~ 42419081 (+) True LOC110499602
XM_036956365.1 mRNA downstream 382946 42484544 ~ 42510757 (+) False LOC110499605
TU1938999 other upstream 482816 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 1888368 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2218696 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2219478 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2741686 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 408033 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 420912 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 420961 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 678401 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 1032029 43133627 ~ 43134013 (+) True G1696541

Expression Profile