RNA id: TU1939468


Basic Information

Item Value
RNA id TU1939468
length 495
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G1695672
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42122226 ~ 42122720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatacatcttcccatcaattttaaccatcttccctttccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgtttgacagtggggatggtgtgttcagggtgatgagctgtgttgcttttacgccaaacataacgtcttgcattgttgccaaaaagttcaattttggtttcatctgaccagatcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttattgatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939465 lncRNA upstream 3387 42112527 ~ 42118839 (+) True G1695669
TU1939461 lncRNA upstream 17764 42104252 ~ 42104462 (+) True G1695665
TU1939460 lncRNA upstream 20628 42101321 ~ 42101598 (+) True G1695664
TU1939439 lncRNA upstream 86104 42035880 ~ 42036122 (+) True G1695645
TU1939426 lncRNA upstream 118125 42003716 ~ 42004101 (+) True G1695632
TU1939473 lncRNA downstream 1868 42124588 ~ 42124909 (+) True G1695674
TU1939474 lncRNA downstream 2897 42125617 ~ 42125922 (+) True G1695675
TU1939475 lncRNA downstream 3393 42126113 ~ 42126315 (+) True G1695676
TU1939512 lncRNA downstream 80240 42202960 ~ 42282192 (+) True parga
TU1939532 lncRNA downstream 86534 42209254 ~ 42209629 (+) True G1695727
XM_036956358.1 mRNA upstream 259834 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA upstream 259834 41830938 ~ 41862392 (+) False LOC110499555
XM_036955566.1 mRNA upstream 426097 41688135 ~ 41696129 (+) True LOC118942019
XM_036956355.1 mRNA upstream 1534644 40525994 ~ 40587582 (+) False LOC110499549
XM_036956361.1 mRNA downstream 51260 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA downstream 51278 42173998 ~ 42282788 (+) False parga
XM_021576625.2 mRNA downstream 285542 42408262 ~ 42413033 (+) True LOC110499494
XM_021576726.2 mRNA downstream 293375 42416095 ~ 42419081 (+) True LOC110499602
XM_036956365.1 mRNA downstream 361824 42484544 ~ 42510757 (+) False LOC110499605
TU1938999 other upstream 503721 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 1909273 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2239601 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2240383 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2762591 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 386911 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 399790 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 399839 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 657279 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 1010907 43133627 ~ 43134013 (+) True G1696541

Expression Profile