RNA id: TU1939513


Basic Information

Item Value
RNA id TU1939513
length 307
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G1695711
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42283442 ~ 42283748 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAAACCCATCTGTTTAAAACTGAGTTTAGTAAATGTCAATCTAGGAAACCAGGCAATTAAAAGCAACTTtcaaaacaatgttttggttcgtttctagcttgttagctaatgttaagttagctggctatCCGGGTTCAAATATTGACTATATCATAGCTGACAACGTCTTAACTTTAGCTAATTTGTATTCATTactacaggaaaataaactcgcAACAAGATCATTGTTTACAAGTTAATGGCGAGCTAATGACAAATGACTTACGGTTGTGAGTGTGATGTaataaaagcagggcattctactgga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939512 lncRNA upstream 1250 42202960 ~ 42282192 (+) True parga
TU1939555 lncRNA upstream 16096 42266382 ~ 42267346 (+) True G1695738
TU1939550 lncRNA upstream 26651 42245837 ~ 42256791 (+) False G1695735
TU1939551 lncRNA upstream 32954 42245837 ~ 42250488 (+) False G1695735
TU1939542 lncRNA upstream 34428 42248005 ~ 42249014 (+) True G1695735
TU1939566 lncRNA downstream 7726 42291474 ~ 42291685 (+) True G1695748
TU1939567 lncRNA downstream 10635 42294383 ~ 42294652 (+) True G1695749
TU1939579 lncRNA downstream 18178 42301926 ~ 42302158 (+) True G1695754
TU1939584 lncRNA downstream 26122 42309870 ~ 42310087 (+) True G1695758
TU1939588 lncRNA downstream 32405 42316153 ~ 42316547 (+) True G1695762
XM_036956361.1 mRNA upstream 654 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA upstream 654 42173998 ~ 42282788 (+) False parga
XM_036956358.1 mRNA upstream 421050 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA upstream 421050 41830938 ~ 41862392 (+) False LOC110499555
XM_036955566.1 mRNA upstream 587313 41688135 ~ 41696129 (+) True LOC118942019
XM_021576625.2 mRNA downstream 124514 42408262 ~ 42413033 (+) True LOC110499494
XM_021576726.2 mRNA downstream 132347 42416095 ~ 42419081 (+) True LOC110499602
XM_036956365.1 mRNA downstream 200796 42484544 ~ 42510757 (+) False LOC110499605
XM_036956366.1 mRNA downstream 238789 42522537 ~ 42526646 (+) False LOC118942073
XR_005038025.1 mRNA downstream 310256 42594004 ~ 42598619 (+) False LOC118942074
TU1938999 other upstream 664937 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 2070489 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2400817 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2401599 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2923807 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 225883 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 238762 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 238811 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 496251 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 849879 43133627 ~ 43134013 (+) True G1696541

Expression Profile