RNA id: TU1939567


Basic Information

Item Value
RNA id TU1939567
length 270
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G1695749
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42294383 ~ 42294652 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtatcatcctcctcctcagagtatcatcctcctcctcagagtATTCTCCTCACCCTCAGAgtattctctttctcctcagagtattgtcctcctccttcctcctcctcagtgtatcctcctcaccctcagagtatcctcctcaccctcagagtatcctcctcctcctcagagtatcatcctcctcctcagagtATTCTCCTCACCCTCAGAgtattctctttctcctcagagtattgtcctcctccttcctcctcctcagtgtattctcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939566 lncRNA upstream 2698 42291474 ~ 42291685 (+) True G1695748
TU1939513 lncRNA upstream 10635 42283442 ~ 42283748 (+) True G1695711
TU1939555 lncRNA upstream 27037 42266382 ~ 42267346 (+) True G1695738
TU1939550 lncRNA upstream 37592 42245837 ~ 42256791 (+) False G1695735
TU1939579 lncRNA downstream 7274 42301926 ~ 42302158 (+) True G1695754
TU1939584 lncRNA downstream 15218 42309870 ~ 42310087 (+) True G1695758
TU1939588 lncRNA downstream 21501 42316153 ~ 42316547 (+) True G1695762
TU1939592 lncRNA downstream 38596 42333248 ~ 42333736 (+) True G1695766
TU1939601 lncRNA downstream 43367 42338019 ~ 42340652 (+) True G1695770
XM_036956361.1 mRNA upstream 11595 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA upstream 11595 42173998 ~ 42282788 (+) False parga
XM_036956358.1 mRNA upstream 431991 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA upstream 431991 41830938 ~ 41862392 (+) False LOC110499555
XM_036955566.1 mRNA upstream 598254 41688135 ~ 41696129 (+) True LOC118942019
XM_021576625.2 mRNA downstream 113610 42408262 ~ 42413033 (+) True LOC110499494
XM_021576726.2 mRNA downstream 121443 42416095 ~ 42419081 (+) True LOC110499602
XM_036956365.1 mRNA downstream 189892 42484544 ~ 42510757 (+) False LOC110499605
XM_036956366.1 mRNA downstream 227885 42522537 ~ 42526646 (+) False LOC118942073
XR_005038025.1 mRNA downstream 299352 42594004 ~ 42598619 (+) False LOC118942074
TU1938999 other upstream 675878 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 2081430 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2411758 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2412540 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2934748 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 214979 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 227858 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 227907 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 485347 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 838975 43133627 ~ 43134013 (+) True G1696541

Expression Profile