RNA id: TU1939584


Basic Information

Item Value
RNA id TU1939584
length 218
lncRNA type inter_gene
GC content 0.28
exon number 1
gene id G1695758
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42309870 ~ 42310087 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aacattactatattcagtgatggaaaaagtaccaaattgtcagacttgagtaaaagtaaagatacctcaatagaaaatgactagggtaaaagtcacacagtaaagtactacttgagcaaaagtctgaaagtatttggCTTTAAATATGAAATGGTTTTAAatatatcaaaagtaaatgtataaatcatttcaaatcccttatattaagcaaaccagac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939579 lncRNA upstream 7712 42301926 ~ 42302158 (+) True G1695754
TU1939567 lncRNA upstream 15218 42294383 ~ 42294652 (+) True G1695749
TU1939566 lncRNA upstream 18185 42291474 ~ 42291685 (+) True G1695748
TU1939513 lncRNA upstream 26122 42283442 ~ 42283748 (+) True G1695711
TU1939555 lncRNA upstream 42524 42266382 ~ 42267346 (+) True G1695738
TU1939588 lncRNA downstream 6066 42316153 ~ 42316547 (+) True G1695762
TU1939592 lncRNA downstream 23161 42333248 ~ 42333736 (+) True G1695766
TU1939601 lncRNA downstream 27932 42338019 ~ 42340652 (+) True G1695770
TU1939603 lncRNA downstream 31917 42342004 ~ 42342457 (+) True G1695772
TU1939610 lncRNA downstream 37604 42347691 ~ 42347947 (+) True G1695778
XM_036956361.1 mRNA upstream 27082 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA upstream 27082 42173998 ~ 42282788 (+) False parga
XM_036956358.1 mRNA upstream 447478 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA upstream 447478 41830938 ~ 41862392 (+) False LOC110499555
XM_036955566.1 mRNA upstream 613741 41688135 ~ 41696129 (+) True LOC118942019
XM_021576625.2 mRNA downstream 98175 42408262 ~ 42413033 (+) True LOC110499494
XM_021576726.2 mRNA downstream 106008 42416095 ~ 42419081 (+) True LOC110499602
XM_036956365.1 mRNA downstream 174457 42484544 ~ 42510757 (+) False LOC110499605
XM_036956366.1 mRNA downstream 212450 42522537 ~ 42526646 (+) False LOC118942073
XR_005038025.1 mRNA downstream 283917 42594004 ~ 42598619 (+) False LOC118942074
TU1938999 other upstream 691365 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 2096917 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2427245 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2428027 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2950235 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 199544 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 212423 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 212472 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 469912 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 823540 43133627 ~ 43134013 (+) True G1696541

Expression Profile