RNA id: TU1939612


Basic Information

Item Value
RNA id TU1939612
length 328
lncRNA type antisense_over
GC content 0.51
exon number 1
gene id G1695780
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42350081 ~ 42350408 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGGTTCTTGCATGCAACGATGATGTGCTCCTGCTCGGTGGACCCAGTCTCGTGGATGACGAGGGTGTCCCTCTTGAGGCCGGGCAGACGGTATGTGTTGAAGAGACGGTAGTACTGCTTCATACACAGAGGGGTCCCAGCCAGCTGGCCCCGAGAAAAGTCCACGGGCAACGCCCGTCTGTCAGGAGGCAGGGCcccagagacaaacagacacagactcaGATCACCTGGGACAACCTCAGCTGCTCTACAGGGACACTTTATCCGGTCTTATATTATATATTCTGTTTATTTTGACTTTAATATTTGACAATCTTTATATTCTTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939611 lncRNA upstream 1671 42348195 ~ 42348410 (+) True G1695779
TU1939610 lncRNA upstream 2134 42347691 ~ 42347947 (+) True G1695778
TU1939603 lncRNA upstream 7624 42342004 ~ 42342457 (+) True G1695772
TU1939601 lncRNA upstream 9429 42338019 ~ 42340652 (+) True G1695770
TU1939592 lncRNA upstream 16345 42333248 ~ 42333736 (+) True G1695766
TU1939615 lncRNA downstream 2872 42353280 ~ 42354061 (+) True G1695781
TU1939632 lncRNA downstream 37950 42388358 ~ 42388583 (+) True G1695795
TU1939638 lncRNA downstream 42070 42392478 ~ 42394407 (+) True G1695798
TU1939655 lncRNA downstream 88332 42438740 ~ 42440591 (+) False G1695815
TU1939657 lncRNA downstream 89031 42439439 ~ 42440591 (+) True G1695815
XM_036956361.1 mRNA upstream 67293 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA upstream 67293 42173998 ~ 42282788 (+) False parga
XM_036956358.1 mRNA upstream 487689 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA upstream 487689 41830938 ~ 41862392 (+) False LOC110499555
XM_036955566.1 mRNA upstream 653952 41688135 ~ 41696129 (+) True LOC118942019
XM_021576625.2 mRNA downstream 57854 42408262 ~ 42413033 (+) True LOC110499494
XM_021576726.2 mRNA downstream 65687 42416095 ~ 42419081 (+) True LOC110499602
XM_036956365.1 mRNA downstream 134136 42484544 ~ 42510757 (+) False LOC110499605
XM_036956366.1 mRNA downstream 172129 42522537 ~ 42526646 (+) False LOC118942073
XR_005038025.1 mRNA downstream 243596 42594004 ~ 42598619 (+) False LOC118942074
TU1938999 other upstream 731576 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 2137128 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2467456 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2468238 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2990446 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 159223 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 172102 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 172151 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 429591 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 783219 43133627 ~ 43134013 (+) True G1696541

Expression Profile