RNA id: TU1939615


Basic Information

Item Value
RNA id TU1939615
length 271
lncRNA type intronic
GC content 0.50
exon number 2
gene id G1695781
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42353280 ~ 42354061 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggctatatacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtgaaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtaccggtacagagtcaatgtggaggctatatacagggggtcccggtacagagtcaatgtggaggctatatacagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939612 lncRNA upstream 2872 42350081 ~ 42350408 (+) True G1695780
TU1939611 lncRNA upstream 4870 42348195 ~ 42348410 (+) True G1695779
TU1939610 lncRNA upstream 5333 42347691 ~ 42347947 (+) True G1695778
TU1939603 lncRNA upstream 10823 42342004 ~ 42342457 (+) True G1695772
TU1939601 lncRNA upstream 12628 42338019 ~ 42340652 (+) True G1695770
TU1939632 lncRNA downstream 34297 42388358 ~ 42388583 (+) True G1695795
TU1939638 lncRNA downstream 38417 42392478 ~ 42394407 (+) True G1695798
TU1939655 lncRNA downstream 84679 42438740 ~ 42440591 (+) False G1695815
TU1939657 lncRNA downstream 85378 42439439 ~ 42440591 (+) True G1695815
TU1939659 lncRNA downstream 90029 42444090 ~ 42445201 (+) True G1695816
XM_036956361.1 mRNA upstream 70492 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA upstream 70492 42173998 ~ 42282788 (+) False parga
XM_036956358.1 mRNA upstream 490888 41830014 ~ 41862392 (+) False LOC110499555
XM_036956359.1 mRNA upstream 490888 41830938 ~ 41862392 (+) False LOC110499555
XM_036955566.1 mRNA upstream 657151 41688135 ~ 41696129 (+) True LOC118942019
XM_021576625.2 mRNA downstream 54201 42408262 ~ 42413033 (+) True LOC110499494
XM_021576726.2 mRNA downstream 62034 42416095 ~ 42419081 (+) True LOC110499602
XM_036956365.1 mRNA downstream 130483 42484544 ~ 42510757 (+) False LOC110499605
XM_036956366.1 mRNA downstream 168476 42522537 ~ 42526646 (+) False LOC118942073
XR_005038025.1 mRNA downstream 239943 42594004 ~ 42598619 (+) False LOC118942074
TU1938999 other upstream 734775 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 2140327 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2470655 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2471437 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 2993645 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 155570 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 168449 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 168498 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 425938 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 779566 43133627 ~ 43134013 (+) True G1696541

Expression Profile