RNA id: TU1939655


Basic Information

Item Value
RNA id TU1939655
length 661
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id G1695815
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42438740 ~ 42440591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCATGTGTTACAcagcatacatacagtacatacacagaaTATATTTGATCATTATGTATCCAAAACATTTTCATAAAGtgtgtacatacatactgtacacagcgTGGAAGTGAATGCTTAGAAACAGTGATTATATTGACTCACGTGTAAATAAATGATTAGCTAATCTGCCTAATCTAGGGTGACTGATTTCCACAGTTTATTGTCTGAAGCAACAAAAAGATCCCTTCAGTTAAATGAGCAATCCAACACCAATCCACCACCAATCCAATACCAATCCAACACCAATCCAATACCAATCCAATACCAATCCAATACCAATCCAGTAACCAATCCAATACCAACCCACCACCCATCCAACATCAATCCAACACCAATCCAACATCAATCCAACACCAATCCATCAGTAATCCACCCAATTAAAAGATGACCCTTTAGAAATGCAAAAGCATTTCAGAAGAAAAAGCAAGTGATTTGAAACAAGAGCTTCAGAATCTTCTAAGTCTCTACTTCAAAATACGACCAACGCCATTAGAATGTCACTACACTAATACTTCTCCTACGtgtaaaatgtggattgaccagattgttaactttcttcctcttgaaaagctcacgcATGACCTCCGCaagagacagaaccaggtttgatagactctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939638 lncRNA upstream 44333 42392478 ~ 42394407 (+) True G1695798
TU1939632 lncRNA upstream 50157 42388358 ~ 42388583 (+) True G1695795
TU1939615 lncRNA upstream 84679 42353280 ~ 42354061 (+) True G1695781
TU1939612 lncRNA upstream 88332 42350081 ~ 42350408 (+) True G1695780
TU1939611 lncRNA upstream 90330 42348195 ~ 42348410 (+) True G1695779
TU1939659 lncRNA downstream 3499 42444090 ~ 42445201 (+) True G1695816
TU1939660 lncRNA downstream 5390 42445981 ~ 42446210 (+) True G1695817
TU1939661 lncRNA downstream 7860 42448451 ~ 42448849 (+) True G1695818
TU1939662 lncRNA downstream 8633 42449224 ~ 42449428 (+) True G1695819
TU1939663 lncRNA downstream 8849 42449440 ~ 42449672 (+) True G1695820
XM_021576726.2 mRNA upstream 19659 42416095 ~ 42419081 (+) True LOC110499602
XM_021576625.2 mRNA upstream 25707 42408262 ~ 42413033 (+) True LOC110499494
XM_036956361.1 mRNA upstream 155952 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA upstream 155952 42173998 ~ 42282788 (+) False parga
XM_036956358.1 mRNA upstream 576348 41830014 ~ 41862392 (+) False LOC110499555
XM_036956365.1 mRNA downstream 43953 42484544 ~ 42510757 (+) False LOC110499605
XM_036956366.1 mRNA downstream 81946 42522537 ~ 42526646 (+) False LOC118942073
XR_005038025.1 mRNA downstream 153413 42594004 ~ 42598619 (+) False LOC118942074
XM_036955568.1 mRNA downstream 215166 42655757 ~ 42660010 (+) True LOC110499499
XM_021576633.2 mRNA downstream 304573 42745164 ~ 42774109 (+) False LOC110499501
TU1938999 other upstream 820235 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 2225787 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2556115 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2556897 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 3079105 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 69040 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 81919 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 81968 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 339408 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 693036 43133627 ~ 43134013 (+) True G1696541

Expression Profile