RNA id: TU1939681


Basic Information

Item Value
RNA id TU1939681
length 200
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G1695835
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42476644 ~ 42476843 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgttggattaataaaccattgttaattcgacgttgtctgcatctgggtcttaccttgaaacGTGATAGTCAGATTTGTTGTTGATCATacctagacagccattttcaagtcttgccatagatttaagccgatttaaatcaaaactgtaactagaccactcaggaacattcaatgtcgtcttggtaagcaactccagtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939680 lncRNA upstream 1416 42473535 ~ 42475228 (+) True G1695834
TU1939672 lncRNA upstream 13954 42462276 ~ 42462690 (+) True G1695827
TU1939669 lncRNA upstream 17689 42458753 ~ 42458955 (+) True G1695824
TU1939664 lncRNA upstream 21907 42450831 ~ 42454737 (+) False G1695821
TU1939666 lncRNA upstream 21907 42453833 ~ 42454737 (+) True G1695821
TU1939682 lncRNA downstream 177 42477020 ~ 42477254 (+) True G1695836
TU1939691 lncRNA downstream 21564 42498407 ~ 42498621 (+) False LOC110499605
TU1939698 lncRNA downstream 35775 42512618 ~ 42512968 (+) True G1695849
TU1939703 lncRNA downstream 45108 42521951 ~ 42522187 (+) True G1695854
TU1939710 lncRNA downstream 45716 42522559 ~ 42527008 (+) False LOC118942073
XM_021576726.2 mRNA upstream 57563 42416095 ~ 42419081 (+) True LOC110499602
XM_021576625.2 mRNA upstream 63611 42408262 ~ 42413033 (+) True LOC110499494
XM_036956361.1 mRNA upstream 193856 42173980 ~ 42282788 (+) False parga
XM_036956360.1 mRNA upstream 193856 42173998 ~ 42282788 (+) False parga
XM_036956359.1 mRNA upstream 614252 41830938 ~ 41862392 (+) False LOC110499555
XM_036956365.1 mRNA downstream 7701 42484544 ~ 42510757 (+) False LOC110499605
XM_036956366.1 mRNA downstream 45694 42522537 ~ 42526646 (+) False LOC118942073
XR_005038025.1 mRNA downstream 117161 42594004 ~ 42598619 (+) False LOC118942074
XM_036955568.1 mRNA downstream 178914 42655757 ~ 42660010 (+) True LOC110499499
XM_021576633.2 mRNA downstream 268321 42745164 ~ 42774109 (+) False LOC110499501
TU1938999 other upstream 858139 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 2263691 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2594019 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2594801 39881349 ~ 39881843 (+) True G1693699
TU1936590 other upstream 3117009 39356345 ~ 39359635 (+) False G1693184
TU1939686 other downstream 32788 42509631 ~ 42511247 (+) True LOC110499605
TU1939722 other downstream 45667 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 45716 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 303156 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 656784 43133627 ~ 43134013 (+) True G1696541

Expression Profile