RNA id: TU1939703


Basic Information

Item Value
RNA id TU1939703
length 237
lncRNA type antisense_over
GC content 0.30
exon number 1
gene id G1695854
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42521951 ~ 42522187 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgccgtttccagttacaatagtcatttacaacattaacaatgtctacactgtatctcTAATCAATTTtaagttattttaatggacaaaaaatgtgctttaaaaaaaaaaaaaaaaagtacatttttgaacggtagtgtaagtcAACGTGCAAATATGAGTTAATGTTAATAAACATGTGAAAACTGTAATGTGAAACTGTTACTTTTTTGTGAGACTAGCGTCTGCCATCTTGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939698 lncRNA upstream 8983 42512618 ~ 42512968 (+) True G1695849
TU1939691 lncRNA upstream 23330 42498407 ~ 42498621 (+) False LOC110499605
TU1939682 lncRNA upstream 44697 42477020 ~ 42477254 (+) True G1695836
TU1939681 lncRNA upstream 45108 42476644 ~ 42476843 (+) True G1695835
TU1939680 lncRNA upstream 46723 42473535 ~ 42475228 (+) True G1695834
TU1939710 lncRNA downstream 372 42522559 ~ 42527008 (+) False LOC118942073
TU1939711 lncRNA downstream 372 42522559 ~ 42527008 (+) False LOC118942073
TU1939745 lncRNA downstream 372 42522559 ~ 42527008 (+) True LOC118942073
TU1939754 lncRNA downstream 9732 42531919 ~ 42532423 (+) True G1695860
TU1939755 lncRNA downstream 10952 42533139 ~ 42533449 (+) True G1695861
XM_036956365.1 mRNA upstream 11194 42484544 ~ 42510757 (+) False LOC110499605
XM_021576726.2 mRNA upstream 102870 42416095 ~ 42419081 (+) True LOC110499602
XM_021576625.2 mRNA upstream 108918 42408262 ~ 42413033 (+) True LOC110499494
XM_036956361.1 mRNA upstream 239163 42173980 ~ 42282788 (+) False parga
XM_036956366.1 mRNA downstream 350 42522537 ~ 42526646 (+) False LOC118942073
XR_005038025.1 mRNA downstream 71817 42594004 ~ 42598619 (+) False LOC118942074
XM_036955568.1 mRNA downstream 133570 42655757 ~ 42660010 (+) True LOC110499499
XM_021576633.2 mRNA downstream 222977 42745164 ~ 42774109 (+) False LOC110499501
XR_005038026.1 mRNA downstream 281402 42803589 ~ 42827092 (+) False LOC118942075
TU1939686 other upstream 10704 42509631 ~ 42511247 (+) True LOC110499605
TU1938999 other upstream 903446 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 2308998 40211522 ~ 40212953 (+) True G1693914
TU1937210 other upstream 2639326 39881958 ~ 39882625 (+) True G1693700
TU1937209 other upstream 2640108 39881349 ~ 39881843 (+) True G1693699
TU1939722 other downstream 323 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other downstream 372 42522559 ~ 42526637 (+) False LOC118942073
TU1940344 other downstream 257812 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 611440 43133627 ~ 43134013 (+) True G1696541
TU1940489 other downstream 615206 43137393 ~ 43138115 (+) True LOC110499564

Expression Profile