RNA id: TU1939754


Basic Information

Item Value
RNA id TU1939754
length 277
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G1695860
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42531919 ~ 42532423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAACACAGTTCCCCCGGACAACACAGTTCCCCCCGGACAACACAGTTCCCCCCGGACAACACAGTTCCCCCGGACAGTAAGACCTCAGACTTACTAAGCAGAACTCTTCGAAGGATATCCTGCCGTCTCCGTCCTTGTCTGCGTTGATGATGGTCTTGTCCACGATCTGCTGCAGCTGGGTGTCCTTCAGGTTGTTTCCTACCATCATCTTCAGCACCTGGAAGAGCTCTCCGTTGGAGATGTAGCCATCCTTGTCCATGTCGTAGATCCGGAAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939710 lncRNA upstream 4911 42522559 ~ 42527008 (+) False LOC118942073
TU1939711 lncRNA upstream 4911 42522559 ~ 42527008 (+) False LOC118942073
TU1939745 lncRNA upstream 4911 42522559 ~ 42527008 (+) True LOC118942073
TU1939703 lncRNA upstream 9732 42521951 ~ 42522187 (+) True G1695854
TU1939698 lncRNA upstream 18951 42512618 ~ 42512968 (+) True G1695849
TU1939755 lncRNA downstream 716 42533139 ~ 42533449 (+) True G1695861
TU1939752 lncRNA downstream 6014 42538437 ~ 42539001 (+) True G1695859
TU1939758 lncRNA downstream 7311 42539734 ~ 42540170 (+) True G1695864
TU1939766 lncRNA downstream 24981 42557404 ~ 42558519 (+) True G1695870
TU1939775 lncRNA downstream 35487 42567910 ~ 42568896 (+) True G1695877
XM_036956366.1 mRNA upstream 5273 42522537 ~ 42526646 (+) False LOC118942073
XM_036956365.1 mRNA upstream 21162 42484544 ~ 42510757 (+) False LOC110499605
XM_021576726.2 mRNA upstream 112838 42416095 ~ 42419081 (+) True LOC110499602
XM_021576625.2 mRNA upstream 118886 42408262 ~ 42413033 (+) True LOC110499494
XM_036956361.1 mRNA upstream 249131 42173980 ~ 42282788 (+) False parga
XR_005038025.1 mRNA downstream 61581 42594004 ~ 42598619 (+) False LOC118942074
XM_036955568.1 mRNA downstream 123334 42655757 ~ 42660010 (+) True LOC110499499
XM_021576633.2 mRNA downstream 212741 42745164 ~ 42774109 (+) False LOC110499501
XR_005038026.1 mRNA downstream 271166 42803589 ~ 42827092 (+) False LOC118942075
XM_036956384.1 mRNA downstream 289374 42821797 ~ 42827092 (+) False LOC118942075
TU1939722 other upstream 4911 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other upstream 5282 42522559 ~ 42526637 (+) False LOC118942073
TU1939686 other upstream 20672 42509631 ~ 42511247 (+) True LOC110499605
TU1938999 other upstream 913414 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 2318966 40211522 ~ 40212953 (+) True G1693914
TU1940344 other downstream 247576 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 601204 43133627 ~ 43134013 (+) True G1696541
TU1940489 other downstream 604970 43137393 ~ 43138115 (+) True LOC110499564
TU1940662 other downstream 675136 43207559 ~ 43209518 (+) True G1696563
TU1941117 other downstream 1091061 43623484 ~ 43626360 (+) True G1696904

Expression Profile