RNA id: TU1939752


Basic Information

Item Value
RNA id TU1939752
length 437
lncRNA type antisense_over
GC content 0.51
exon number 2
gene id G1695859
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 42538437 ~ 42539001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GgaaaaagcacaaacagatctgggaccaggctatagaaggagacaacagatctgggaccaggctatagaaggagacaacagatctgggaccaggctataggaggagacaacagatctgggaccaggctataggaggagacaacagatctgggaccaggctatagaaggagacaacagatctgggaccaggctataggaggagacaacagatctgggaccaggctatagaaggagacaacagatctgggaccagtctactCTGGCTTACCCTTGAAGTCCACCTCTCCGTTTCCATCGGTGTCGAAGATGTCGATGACCCTCTGGACCAGCGGGTTCTGCTGGAGTTCAGGCAGGGACATGAACTCCTCCACGCTAAGGGATCCAGAGTTATCTAGGTCCAGTTTCTTAAACCTCTTTCCCAGACGCTTAATCTCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1939755 lncRNA upstream 4988 42533139 ~ 42533449 (+) True G1695861
TU1939754 lncRNA upstream 6014 42531919 ~ 42532423 (+) True G1695860
TU1939710 lncRNA upstream 11429 42522559 ~ 42527008 (+) False LOC118942073
TU1939711 lncRNA upstream 11429 42522559 ~ 42527008 (+) False LOC118942073
TU1939745 lncRNA upstream 11429 42522559 ~ 42527008 (+) True LOC118942073
TU1939758 lncRNA downstream 733 42539734 ~ 42540170 (+) True G1695864
TU1939766 lncRNA downstream 18403 42557404 ~ 42558519 (+) True G1695870
TU1939775 lncRNA downstream 28909 42567910 ~ 42568896 (+) True G1695877
TU1939780 lncRNA downstream 34209 42573210 ~ 42574315 (+) True G1695881
TU1939779 lncRNA downstream 39471 42578472 ~ 42578721 (+) True G1695880
XM_036956366.1 mRNA upstream 11791 42522537 ~ 42526646 (+) False LOC118942073
XM_036956365.1 mRNA upstream 27680 42484544 ~ 42510757 (+) False LOC110499605
XM_021576726.2 mRNA upstream 119356 42416095 ~ 42419081 (+) True LOC110499602
XM_021576625.2 mRNA upstream 125404 42408262 ~ 42413033 (+) True LOC110499494
XM_036956360.1 mRNA upstream 255649 42173998 ~ 42282788 (+) False parga
XR_005038025.1 mRNA downstream 55003 42594004 ~ 42598619 (+) False LOC118942074
XM_036955568.1 mRNA downstream 116756 42655757 ~ 42660010 (+) True LOC110499499
XM_021576633.2 mRNA downstream 206163 42745164 ~ 42774109 (+) False LOC110499501
XR_005038026.1 mRNA downstream 264588 42803589 ~ 42827092 (+) False LOC118942075
XM_036956384.1 mRNA downstream 282796 42821797 ~ 42827092 (+) False LOC118942075
TU1939722 other upstream 11429 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other upstream 11800 42522559 ~ 42526637 (+) False LOC118942073
TU1939686 other upstream 27190 42509631 ~ 42511247 (+) True LOC110499605
TU1938999 other upstream 919932 41618027 ~ 41618505 (+) True G1695272
TU1937449 other upstream 2325484 40211522 ~ 40212953 (+) True G1693914
TU1940344 other downstream 240998 42779999 ~ 42780549 (+) True G1696324
TU1940630 other downstream 594626 43133627 ~ 43134013 (+) True G1696541
TU1940489 other downstream 598392 43137393 ~ 43138115 (+) True LOC110499564
TU1940662 other downstream 668558 43207559 ~ 43209518 (+) True G1696563
TU1941117 other downstream 1084483 43623484 ~ 43626360 (+) True G1696904

Expression Profile