RNA id: TU1940486


Basic Information

Item Value
RNA id TU1940486
length 2220
lncRNA type inter_gene
GC content 0.43
exon number 3
gene id G1696432
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43125707 ~ 43128000 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcaagtggtctgaataatGTCTGAATGCACTGCATATCAATATTTTAaatgtccaaaaatggatgtattAATTACAGATTGCGCCTTTAAAAACATAATTGGTAGGCCTCTTGATCACAAATGGTAATTTACCATTAAATATTGAGGGGATTATTTGAAGCAAAAtaggtgcattaccaccatcactaccaccatcactactaccatcactaccaccatcactaccaccatcactaccaccatcactaccaccatcactactaccaccatcactaccatcatcactactaccatcatcactaccatcactaccatcatcactactaccatcactaccatcactactaccaccaccactactaccatcatcactaccatcactaccaccatcacaacctccatcatcactactaccatcactaccaacATCACTACCACATCACTACCaacattactactaccatcatcactactaccatcaaTACTACCATCAatattaccaccaccactactaccatcaataCTACCATCAATACTACCATCAATACTACTACcaacactaccaccatcactactaccaccatcactaccaccatcactactaccatcactactaccaccatcactaccatcatcactactactaccatcactaccaacATCACTACCacAATCACTTCTACCATCACCActatcactactaccatcaccaccaccaccatcactaccaccatcactactaccatcaccatcactactaccatcaccaccaccaccactcagaccatcactactaccaccaccaccatcactactaccatcaccaccaccatcactactaccatcaccaccatcactactaccaccatcaccaccatcactactaccaccatcaccaccaccacaatcactactaccaccactactaccaccatcactaccaccatcactactacatcactactaccatcactactaccatcaatactactaccatcactactaccaccatcaccatcactaccaacattactactactaccatcactactaccaccactactaccaccactactaccgccactactaccatcatcactaccacaTCACTACTACCAACattactaccatcaccatcactactaccaccaccaccaccatcactactaccatcaatactactaccatcaccactatcactcccaccatcactactaccatcaccaccatcactactaccatcaaccaccactatcactactaccaccaccaccaccatcactactaccaccaccatcactactaccaccaccatcactactaccaccaccactaccaccaccactactaccaccaccaccactaccaccaccaccaccaccaccactactaccatcactactaaagttatctagctagctagcagctcagTTTGCCTACAAAGACGCCTACTGTAGCCAGCAAGCTAGCTGGCAAATAATAACTGCCTCTGTTTTTTGGGGTccttacaaaaacaaaataatggTTAATATTCAGAATATTTTTGGTGGTAGCAAAGTGGCCGCCAGCAGCCATGTTGACAAATGAAGAAAATTATGTTTGTCACCAGAGTGGTTTAAAACATGTTGAGACGTTTGACTTCACCAGCGTAATCCACTTTAGATTGTATTAAATAAAAATTGCAGACTGTCGACCACACTTGATAAATTGAAAACCAGCAACAGGCAACAACTACCCTGACAGAAAACAGTGACGCACATGAAACACAGCACCCCTTCTACGGGAGTGTGGGGGTGAGGGTTCTTGAAGAGTATCATCCAATCAAAATCTTGCCGCTGGGAGCCAGCAGCCAATTTAAACTGTTTGTGCAAAACAAAATTCTCCTGACCTTCGAGGGAGGCGCGATAACAAAATGATTATGGAGGTATGGCAACGCATGCCCTTATACTCTACATCAAGTGTCCTTAATTGGACAATGATTTACTTGATTCTGGGCAGCTTTTAGCAGTGCAGAAATGCCAATTTTTCTATGGCCATATCACTTTCACGCTCATAAATCTGGTGGTTTAGCTCCCATTTTAGGCTGAGTCCCAATTGTTGTCACAGCGGAAGATTTTACAGTAATTTAATCAGAATGACAGCAGCATACTGTCATTTTATAGAAATGCCACCTTcaagttatatacagtaccagtcaaaacttaGACGCAGTTGTCAGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1940492 lncRNA upstream 113 43120968 ~ 43125594 (+) True LOC110499502
TU1940616 lncRNA upstream 14638 43107649 ~ 43111069 (+) True G1696529
TU1940615 lncRNA upstream 15866 43106753 ~ 43109841 (+) True G1696528
TU1940613 lncRNA upstream 19841 43100523 ~ 43105866 (+) False G1696526
TU1940632 lncRNA downstream 6161 43134161 ~ 43134694 (+) True G1696542
TU1940479 lncRNA downstream 22604 43150604 ~ 43155908 (+) True G1696431
TU1940646 lncRNA downstream 29813 43157813 ~ 43158134 (+) True G1696549
TU1940651 lncRNA downstream 43463 43171463 ~ 43172287 (+) True G1696553
TU1940652 lncRNA downstream 44440 43172440 ~ 43172684 (+) True G1696554
XM_036956385.1 mRNA upstream 3812 42950949 ~ 43121895 (+) False LOC110499502
XM_036955561.1 mRNA upstream 273968 42846046 ~ 42851739 (+) True tbxtb
XR_005038026.1 mRNA upstream 298615 42803589 ~ 42827092 (+) False LOC118942075
XM_036956384.1 mRNA upstream 298615 42821797 ~ 42827092 (+) False LOC118942075
XM_021576633.2 mRNA upstream 351598 42745164 ~ 42774109 (+) False LOC110499501
XM_036956387.1 mRNA downstream 9388 43137388 ~ 43148369 (+) False LOC110499564
XM_036956388.1 mRNA downstream 9388 43137388 ~ 43148369 (+) False LOC110499564
XM_036956386.1 mRNA downstream 9389 43137389 ~ 43148369 (+) False LOC110499564
XM_036955569.1 mRNA downstream 243693 43371693 ~ 43402764 (+) True LOC110510394
XM_036955570.1 mRNA downstream 320714 43448714 ~ 43494181 (+) True LOC118942021
TU1940344 other upstream 345158 42779999 ~ 42780549 (+) True G1696324
TU1939722 other upstream 598699 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other upstream 599070 42522559 ~ 42526637 (+) False LOC118942073
TU1939686 other upstream 614460 42509631 ~ 42511247 (+) True LOC110499605
TU1938999 other upstream 1507202 41618027 ~ 41618505 (+) True G1695272
TU1940630 other downstream 5627 43133627 ~ 43134013 (+) True G1696541
TU1940489 other downstream 9393 43137393 ~ 43138115 (+) True LOC110499564
TU1940662 other downstream 79559 43207559 ~ 43209518 (+) True G1696563
TU1941117 other downstream 495484 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 498388 43626388 ~ 43661355 (+) True G1696905

Expression Profile