RNA id: TU1940630


Basic Information

Item Value
RNA id TU1940630
length 387
RNA type TUCP
GC content 0.50
exon number 1
gene id G1696541
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43133627 ~ 43134013 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tcgagggaaagatgaacggagcaaagtacagagagatccttgatgaaaacatgctccagagcgctcaggacctcagactggggcaaaggttcaccttccaacaggacaacgaccttaagcacacagccaagacaactcaggagtggctttgggacaagtctctgaatgtccttgagtggcacagtcagagcccagacttgaactcgatagaacatctctggagagacctgaaaataactgtgcagcgacgctccccatcgaacctgacagagcttgagaggatctgcagagaagaatgggagaaactccccaaatacaggtgtgccaagcttgtagtgtcatacccaagactgaaggctgtaattgctgccaaaggtgcttcaacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1940485 lncRNA upstream 5627 43125707 ~ 43128000 (+) False G1696432
TU1940486 lncRNA upstream 5627 43125707 ~ 43128000 (+) False G1696432
TU1940487 lncRNA upstream 5627 43125707 ~ 43128000 (+) True G1696432
TU1940492 lncRNA upstream 8033 43120968 ~ 43125594 (+) True LOC110499502
TU1940616 lncRNA upstream 22558 43107649 ~ 43111069 (+) True G1696529
TU1940632 lncRNA downstream 148 43134161 ~ 43134694 (+) True G1696542
TU1940479 lncRNA downstream 16591 43150604 ~ 43155908 (+) True G1696431
TU1940646 lncRNA downstream 23800 43157813 ~ 43158134 (+) True G1696549
TU1940651 lncRNA downstream 37450 43171463 ~ 43172287 (+) True G1696553
TU1940652 lncRNA downstream 38427 43172440 ~ 43172684 (+) True G1696554
XM_036956385.1 mRNA upstream 11732 42950949 ~ 43121895 (+) False LOC110499502
XM_036955561.1 mRNA upstream 281888 42846046 ~ 42851739 (+) True tbxtb
XR_005038026.1 mRNA upstream 306535 42803589 ~ 42827092 (+) False LOC118942075
XM_036956384.1 mRNA upstream 306535 42821797 ~ 42827092 (+) False LOC118942075
XM_021576633.2 mRNA upstream 359518 42745164 ~ 42774109 (+) False LOC110499501
XM_036956387.1 mRNA downstream 3375 43137388 ~ 43148369 (+) False LOC110499564
XM_036956388.1 mRNA downstream 3375 43137388 ~ 43148369 (+) False LOC110499564
XM_036956386.1 mRNA downstream 3376 43137389 ~ 43148369 (+) False LOC110499564
XM_036955569.1 mRNA downstream 237680 43371693 ~ 43402764 (+) True LOC110510394
XM_036955570.1 mRNA downstream 314701 43448714 ~ 43494181 (+) True LOC118942021
TU1940344 other upstream 353078 42779999 ~ 42780549 (+) True G1696324
TU1939722 other upstream 606619 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other upstream 606990 42522559 ~ 42526637 (+) False LOC118942073
TU1939686 other upstream 622380 42509631 ~ 42511247 (+) True LOC110499605
TU1938999 other upstream 1515122 41618027 ~ 41618505 (+) True G1695272
TU1940489 other downstream 3380 43137393 ~ 43138115 (+) True LOC110499564
TU1940662 other downstream 73546 43207559 ~ 43209518 (+) True G1696563
TU1941117 other downstream 489471 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 492375 43626388 ~ 43661355 (+) True G1696905
TU1941142 other downstream 535551 43669564 ~ 43670353 (+) True G1696916

Expression Profile