RNA id: TU1940632


Basic Information

Item Value
RNA id TU1940632
length 470
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G1696542
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43134161 ~ 43134694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

taaatgtcatatttcatttatttatttttttgttgcaaaaatgtaaaaaaaaactgtttttgctttgtcattatggggtgtagattgatgtggagggaaaaaaaacaattgaatccttttttagaataaggctgtaacgtaacaaaaatgtggaaaaagccaaatGGTGTGAATAATATCGGAATGCACTGTATACGCTACCTGTTGCCGTCTTGGCCTGTATTCACAGAGCGTCTCAGTATAGGAGGTGATAATCTTATTCATTACGATCCTACTCTTAAGACGCTTTGTGGAAACGGCCCAGGTATCTCAAAGACCTTTATTGTCTCTACTGAGACTATcttggttaaataaatacattaaaaaaaatgttctaAATGATTAGCAGAGCCAGTCTCTCACTGTTGTTCTGTGATCTGGTTCTATTCACATGGAGGTGTTGGAACAAAATATGGACTACGACACAACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1940485 lncRNA upstream 6161 43125707 ~ 43128000 (+) False G1696432
TU1940486 lncRNA upstream 6161 43125707 ~ 43128000 (+) False G1696432
TU1940487 lncRNA upstream 6161 43125707 ~ 43128000 (+) True G1696432
TU1940492 lncRNA upstream 8567 43120968 ~ 43125594 (+) True LOC110499502
TU1940616 lncRNA upstream 23092 43107649 ~ 43111069 (+) True G1696529
TU1940479 lncRNA downstream 15910 43150604 ~ 43155908 (+) True G1696431
TU1940646 lncRNA downstream 23119 43157813 ~ 43158134 (+) True G1696549
TU1940651 lncRNA downstream 36769 43171463 ~ 43172287 (+) True G1696553
TU1940652 lncRNA downstream 37746 43172440 ~ 43172684 (+) True G1696554
TU1940658 lncRNA downstream 63715 43198409 ~ 43225842 (+) True G1696559
XM_036956385.1 mRNA upstream 12266 42950949 ~ 43121895 (+) False LOC110499502
XM_036955561.1 mRNA upstream 282422 42846046 ~ 42851739 (+) True tbxtb
XR_005038026.1 mRNA upstream 307069 42803589 ~ 42827092 (+) False LOC118942075
XM_036956384.1 mRNA upstream 307069 42821797 ~ 42827092 (+) False LOC118942075
XM_021576633.2 mRNA upstream 360052 42745164 ~ 42774109 (+) False LOC110499501
XM_036956387.1 mRNA downstream 2694 43137388 ~ 43148369 (+) False LOC110499564
XM_036956388.1 mRNA downstream 2694 43137388 ~ 43148369 (+) False LOC110499564
XM_036956386.1 mRNA downstream 2695 43137389 ~ 43148369 (+) False LOC110499564
XM_036955569.1 mRNA downstream 236999 43371693 ~ 43402764 (+) True LOC110510394
XM_036955570.1 mRNA downstream 314020 43448714 ~ 43494181 (+) True LOC118942021
TU1940630 other upstream 148 43133627 ~ 43134013 (+) True G1696541
TU1940344 other upstream 353612 42779999 ~ 42780549 (+) True G1696324
TU1939722 other upstream 607153 42522510 ~ 42527008 (+) False LOC118942073
TU1939742 other upstream 607524 42522559 ~ 42526637 (+) False LOC118942073
TU1939686 other upstream 622914 42509631 ~ 42511247 (+) True LOC110499605
TU1940489 other downstream 2699 43137393 ~ 43138115 (+) True LOC110499564
TU1940662 other downstream 72865 43207559 ~ 43209518 (+) True G1696563
TU1941117 other downstream 488790 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 491694 43626388 ~ 43661355 (+) True G1696905
TU1941142 other downstream 534870 43669564 ~ 43670353 (+) True G1696916

Expression Profile