RNA id: TU1940682


Basic Information

Item Value
RNA id TU1940682
length 228
lncRNA type intronic
GC content 0.32
exon number 2
gene id G1696579
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43251123 ~ 43253120 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCCAGTGGCAGTTTAGATTCAATCGCCAAACTACATTTACATTAGATTTTACAACAAGATTTTATCTTGGTTTTAAATCAAACGTAAACTTAGTTTAGATGAAGGATTCAATTTAACTAGGATTTAAATTTAAAACTAAGTTTATAGATACAACTTTAAATTTAAGAGTTAATCCATATTGGTGCAACCCACCCCATCCCTCTTAGAAACACACAACCCACCCCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1940679 lncRNA upstream 3565 43247162 ~ 43247558 (+) True G1696576
TU1940658 lncRNA upstream 25281 43198409 ~ 43225842 (+) True G1696559
TU1940666 lncRNA upstream 33934 43214943 ~ 43217189 (+) True G1696566
TU1940652 lncRNA upstream 78439 43172440 ~ 43172684 (+) True G1696554
TU1940651 lncRNA upstream 78836 43171463 ~ 43172287 (+) True G1696553
TU1940942 lncRNA downstream 93674 43346794 ~ 43347101 (+) True G1696796
TU1940944 lncRNA downstream 94007 43347127 ~ 43347398 (+) True G1696798
TU1940956 lncRNA downstream 96995 43350115 ~ 43351243 (+) True G1696804
TU1940961 lncRNA downstream 101163 43354283 ~ 43354517 (+) True G1696807
TU1940972 lncRNA downstream 115110 43368230 ~ 43369042 (+) True G1696816
XM_036956387.1 mRNA upstream 102754 43137388 ~ 43148369 (+) False LOC110499564
XM_036956388.1 mRNA upstream 102754 43137388 ~ 43148369 (+) False LOC110499564
XM_036956386.1 mRNA upstream 102754 43137389 ~ 43148369 (+) False LOC110499564
XM_036956385.1 mRNA upstream 129228 42950949 ~ 43121895 (+) False LOC110499502
XM_036955561.1 mRNA upstream 399384 42846046 ~ 42851739 (+) True tbxtb
XM_036955569.1 mRNA downstream 118573 43371693 ~ 43402764 (+) True LOC110510394
XM_036955570.1 mRNA downstream 195594 43448714 ~ 43494181 (+) True LOC118942021
XM_036956406.1 mRNA downstream 344967 43598087 ~ 43614283 (+) False LOC110499505
XM_036956405.1 mRNA downstream 344968 43598088 ~ 43615698 (+) False LOC110499505
XM_021576651.2 mRNA downstream 724160 43977280 ~ 43987101 (+) True LOC110499517
TU1940662 other upstream 41605 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 113008 43137393 ~ 43138115 (+) True LOC110499564
TU1940630 other upstream 117110 43133627 ~ 43134013 (+) True G1696541
TU1940344 other upstream 470574 42779999 ~ 42780549 (+) True G1696324
TU1939742 other upstream 724486 42522559 ~ 42526637 (+) False LOC118942073
TU1941117 other downstream 370364 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 373268 43626388 ~ 43661355 (+) True G1696905
TU1941142 other downstream 416444 43669564 ~ 43670353 (+) True G1696916
TU1941505 other downstream 614109 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 614109 43867229 ~ 43904858 (+) False G1697152

Expression Profile