RNA id: TU1940956


Basic Information

Item Value
RNA id TU1940956
length 529
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G1696804
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43350115 ~ 43351243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TACTATGTAGGGGatagcagtagtgcactatgtaggggatagcagtagtgtactatgtaggggatagcAGTAGTGTCCTATGTAGGGGatagcagtagtgcactatgtaggggatagcagtagtgtactatgtagtggatagcagtagtgcactatgtaggggacagcagtagtgcactatgtaggggacagcagtagtgcactatgtaggggacagcagtagtgcactatgtaggggatagcagtagtgcactatgtaggggacagcagtagtgtactatgtaggggacagcagtagtgtactatgtagtggatagcagtagtgcactatgtaggggacagcagtagtgcactatgtaggggacagcagtagtgcactatgtaggggacagCAGTAGTGCCCTACATTGCCATTTGGGAGAACCATAGGCGTACTCTCTGTAGCTCCATTCTGTAGAATGGGCACAAGCAAATAGCCTACacttaaaggttaaatatatatatatattttttatagcaCATACAGTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1940944 lncRNA upstream 2717 43347127 ~ 43347398 (+) True G1696798
TU1940942 lncRNA upstream 3014 43346794 ~ 43347101 (+) True G1696796
TU1940682 lncRNA upstream 96995 43251123 ~ 43253120 (+) True G1696579
TU1940679 lncRNA upstream 102557 43247162 ~ 43247558 (+) True G1696576
TU1940658 lncRNA upstream 124273 43198409 ~ 43225842 (+) True G1696559
TU1940961 lncRNA downstream 3040 43354283 ~ 43354517 (+) True G1696807
TU1940972 lncRNA downstream 16987 43368230 ~ 43369042 (+) True G1696816
TU1940974 lncRNA downstream 19521 43370764 ~ 43370984 (+) True G1696818
TU1941010 lncRNA downstream 26865 43378108 ~ 43378363 (+) True G1696828
TU1941014 lncRNA downstream 35492 43386735 ~ 43387185 (+) True G1696831
XM_036956387.1 mRNA upstream 201746 43137388 ~ 43148369 (+) False LOC110499564
XM_036956388.1 mRNA upstream 201746 43137388 ~ 43148369 (+) False LOC110499564
XM_036956386.1 mRNA upstream 201746 43137389 ~ 43148369 (+) False LOC110499564
XM_036956385.1 mRNA upstream 228220 42950949 ~ 43121895 (+) False LOC110499502
XM_036955561.1 mRNA upstream 498376 42846046 ~ 42851739 (+) True tbxtb
XM_036955569.1 mRNA downstream 20450 43371693 ~ 43402764 (+) True LOC110510394
XM_036955570.1 mRNA downstream 97471 43448714 ~ 43494181 (+) True LOC118942021
XM_036956406.1 mRNA downstream 246844 43598087 ~ 43614283 (+) False LOC110499505
XM_036956405.1 mRNA downstream 246845 43598088 ~ 43615698 (+) False LOC110499505
XM_021576651.2 mRNA downstream 626037 43977280 ~ 43987101 (+) True LOC110499517
TU1940662 other upstream 140597 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 212000 43137393 ~ 43138115 (+) True LOC110499564
TU1940630 other upstream 216102 43133627 ~ 43134013 (+) True G1696541
TU1940344 other upstream 569566 42779999 ~ 42780549 (+) True G1696324
TU1939742 other upstream 823478 42522559 ~ 42526637 (+) False LOC118942073
TU1941117 other downstream 272241 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 275145 43626388 ~ 43661355 (+) True G1696905
TU1941142 other downstream 318321 43669564 ~ 43670353 (+) True G1696916
TU1941505 other downstream 515986 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 515986 43867229 ~ 43904858 (+) False G1697152

Expression Profile