RNA id: TU1940972


Basic Information

Item Value
RNA id TU1940972
length 813
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G1696816
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43368230 ~ 43369042 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtaggtgtaattttttgtgtgttcaattaaggtgttgttcagggtgaatttacatttttgtttctgacatctgggtttttttttggaaaatcatgattttagttttttggaaatttactgccagggcccaattatggcaatattgctccagaatattaatgttttgttgaagaccttctttggttggtgatagaagtaccaagtcatcagcatatagcaggtatttcacctctgtgtcaaatagtgtgagtcctggggctggagattggtccaacatgtctgctaattcattgatataaatgttgaaaagatttggactcaaattgcagccttgtctcacacctcgacattgtgaaaaaaaattctgttctttggtttttgatttttattgcacacttattttctgtgtacatacattttattaagtcatacaccttaccaccaagcccactttgtagaattttgtagaatagcccttcgtgccaaatcgaatcaaatgctttttttaaagtcaataaagcaagcaaagattttgccctcttttttttggtggacgtgtttattaattagtgtgtgtaaggtgtatatatggtcagtagtgcgatggttagggagaaagccaatttgacatttacttattacatttttttcttgaagaaaggtttgaattcttgaattcaaaatgctacagaaaatctttcccaagttactgttgacgcaaattcccctgtaattattggggtctgatttgtctccacttttgtggataggggagatgagcccctggttccagacatcagggaagcagccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1940961 lncRNA upstream 13713 43354283 ~ 43354517 (+) True G1696807
TU1940956 lncRNA upstream 16987 43350115 ~ 43351243 (+) True G1696804
TU1940944 lncRNA upstream 20832 43347127 ~ 43347398 (+) True G1696798
TU1940942 lncRNA upstream 21129 43346794 ~ 43347101 (+) True G1696796
TU1940682 lncRNA upstream 115110 43251123 ~ 43253120 (+) True G1696579
TU1940974 lncRNA downstream 1722 43370764 ~ 43370984 (+) True G1696818
TU1941010 lncRNA downstream 9066 43378108 ~ 43378363 (+) True G1696828
TU1941014 lncRNA downstream 17693 43386735 ~ 43387185 (+) True G1696831
TU1941015 lncRNA downstream 18215 43387257 ~ 43387571 (+) True G1696832
TU1941028 lncRNA downstream 50280 43419322 ~ 43419563 (+) True G1696845
XM_036956387.1 mRNA upstream 219861 43137388 ~ 43148369 (+) False LOC110499564
XM_036956388.1 mRNA upstream 219861 43137388 ~ 43148369 (+) False LOC110499564
XM_036956386.1 mRNA upstream 219861 43137389 ~ 43148369 (+) False LOC110499564
XM_036956385.1 mRNA upstream 246335 42950949 ~ 43121895 (+) False LOC110499502
XM_036955561.1 mRNA upstream 516491 42846046 ~ 42851739 (+) True tbxtb
XM_036955569.1 mRNA downstream 2651 43371693 ~ 43402764 (+) True LOC110510394
XM_036955570.1 mRNA downstream 79672 43448714 ~ 43494181 (+) True LOC118942021
XM_036956406.1 mRNA downstream 229045 43598087 ~ 43614283 (+) False LOC110499505
XM_036956405.1 mRNA downstream 229046 43598088 ~ 43615698 (+) False LOC110499505
XM_021576651.2 mRNA downstream 608238 43977280 ~ 43987101 (+) True LOC110499517
TU1940662 other upstream 158712 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 230115 43137393 ~ 43138115 (+) True LOC110499564
TU1940630 other upstream 234217 43133627 ~ 43134013 (+) True G1696541
TU1940344 other upstream 587681 42779999 ~ 42780549 (+) True G1696324
TU1939742 other upstream 841593 42522559 ~ 42526637 (+) False LOC118942073
TU1941117 other downstream 254442 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 257346 43626388 ~ 43661355 (+) True G1696905
TU1941142 other downstream 300522 43669564 ~ 43670353 (+) True G1696916
TU1941505 other downstream 498187 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 498187 43867229 ~ 43904858 (+) False G1697152

Expression Profile