RNA id: TU1941029


Basic Information

Item Value
RNA id TU1941029
length 202
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G1696846
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43420156 ~ 43420357 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gacaatttcgaccttttggaaacaaaacacattttataaggaggatgggatccatccaaatcatttgggttcctggatcctctcacagcattataaggctgcgttgagacaaggacttatcaatgacccgagcccagctcagttaatccctaccattgtgttgctgagttgtcataatgcctcagcaaatgtacattatacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1941028 lncRNA upstream 593 43419322 ~ 43419563 (+) True G1696845
TU1941015 lncRNA upstream 32585 43387257 ~ 43387571 (+) True G1696832
TU1941014 lncRNA upstream 32971 43386735 ~ 43387185 (+) True G1696831
TU1941010 lncRNA upstream 41793 43378108 ~ 43378363 (+) True G1696828
TU1940974 lncRNA upstream 49172 43370764 ~ 43370984 (+) True G1696818
TU1941031 lncRNA downstream 121 43420478 ~ 43421253 (+) False G1696847
TU1941030 lncRNA downstream 831 43421188 ~ 43421746 (+) True G1696847
TU1941043 lncRNA downstream 8309 43428666 ~ 43428933 (+) True G1696851
TU1941061 lncRNA downstream 40421 43460778 ~ 43461000 (+) True G1696861
TU1941065 lncRNA downstream 54807 43475164 ~ 43475511 (+) True G1696865
XM_036955569.1 mRNA upstream 17392 43371693 ~ 43402764 (+) True LOC110510394
XM_036956387.1 mRNA upstream 271787 43137388 ~ 43148369 (+) False LOC110499564
XM_036956388.1 mRNA upstream 271787 43137388 ~ 43148369 (+) False LOC110499564
XM_036956386.1 mRNA upstream 271787 43137389 ~ 43148369 (+) False LOC110499564
XM_036956385.1 mRNA upstream 298261 42950949 ~ 43121895 (+) False LOC110499502
XM_036955570.1 mRNA downstream 28357 43448714 ~ 43494181 (+) True LOC118942021
XM_036956406.1 mRNA downstream 177730 43598087 ~ 43614283 (+) False LOC110499505
XM_036956405.1 mRNA downstream 177731 43598088 ~ 43615698 (+) False LOC110499505
XM_021576651.2 mRNA downstream 556923 43977280 ~ 43987101 (+) True LOC110499517
XR_002469994.2 mRNA downstream 603662 44024019 ~ 44028357 (+) True LOC110499607
TU1940662 other upstream 210638 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 282041 43137393 ~ 43138115 (+) True LOC110499564
TU1940630 other upstream 286143 43133627 ~ 43134013 (+) True G1696541
TU1940344 other upstream 639607 42779999 ~ 42780549 (+) True G1696324
TU1939742 other upstream 893519 42522559 ~ 42526637 (+) False LOC118942073
TU1941117 other downstream 203127 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 206031 43626388 ~ 43661355 (+) True G1696905
TU1941142 other downstream 249207 43669564 ~ 43670353 (+) True G1696916
TU1941505 other downstream 446872 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 446872 43867229 ~ 43904858 (+) False G1697152

Expression Profile