RNA id: TU1941031


Basic Information

Item Value
RNA id TU1941031
length 265
lncRNA type inter_gene
GC content 0.48
exon number 3
gene id G1696847
representative False

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43420478 ~ 43421746 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actgttaacactgaggtggtgtgtcctagtaggaagaccactgttaacactgaggtggtgtgtcctataggaagaccactgttaacactgaggtggtgtgtcctataggaagaccactgttaacactgaggaggtgtgtcctataggaagaccactgttaacactgaggtggtgtgtcctagtaggaagaccactgttaacactgagtaggtgtgtcctagtaggaagaccactgttaacactgaggtggtgtgtcctagtagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1941029 lncRNA upstream 121 43420156 ~ 43420357 (+) True G1696846
TU1941028 lncRNA upstream 915 43419322 ~ 43419563 (+) True G1696845
TU1941015 lncRNA upstream 32907 43387257 ~ 43387571 (+) True G1696832
TU1941014 lncRNA upstream 33293 43386735 ~ 43387185 (+) True G1696831
TU1941010 lncRNA upstream 42115 43378108 ~ 43378363 (+) True G1696828
TU1941043 lncRNA downstream 7413 43428666 ~ 43428933 (+) True G1696851
TU1941061 lncRNA downstream 39525 43460778 ~ 43461000 (+) True G1696861
TU1941065 lncRNA downstream 53911 43475164 ~ 43475511 (+) True G1696865
TU1941067 lncRNA downstream 63420 43484673 ~ 43484902 (+) True G1696867
TU1941068 lncRNA downstream 63844 43485097 ~ 43485426 (+) True G1696868
XM_036955569.1 mRNA upstream 17714 43371693 ~ 43402764 (+) True LOC110510394
XM_036956387.1 mRNA upstream 272109 43137388 ~ 43148369 (+) False LOC110499564
XM_036956388.1 mRNA upstream 272109 43137388 ~ 43148369 (+) False LOC110499564
XM_036956386.1 mRNA upstream 272109 43137389 ~ 43148369 (+) False LOC110499564
XM_036956385.1 mRNA upstream 298583 42950949 ~ 43121895 (+) False LOC110499502
XM_036955570.1 mRNA downstream 27461 43448714 ~ 43494181 (+) True LOC118942021
XM_036956406.1 mRNA downstream 176834 43598087 ~ 43614283 (+) False LOC110499505
XM_036956405.1 mRNA downstream 176835 43598088 ~ 43615698 (+) False LOC110499505
XM_021576651.2 mRNA downstream 556027 43977280 ~ 43987101 (+) True LOC110499517
XR_002469994.2 mRNA downstream 602766 44024019 ~ 44028357 (+) True LOC110499607
TU1940662 other upstream 210960 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 282363 43137393 ~ 43138115 (+) True LOC110499564
TU1940630 other upstream 286465 43133627 ~ 43134013 (+) True G1696541
TU1940344 other upstream 639929 42779999 ~ 42780549 (+) True G1696324
TU1939742 other upstream 893841 42522559 ~ 42526637 (+) False LOC118942073
TU1941117 other downstream 202231 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 205135 43626388 ~ 43661355 (+) True G1696905
TU1941142 other downstream 248311 43669564 ~ 43670353 (+) True G1696916
TU1941505 other downstream 445976 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 445976 43867229 ~ 43904858 (+) False G1697152

Expression Profile