RNA id: TU1941088



Basic Information


Item Value
RNA id TU1941088
length 1139
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G1696882
representative False

Chromosome Information


Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43569652 ~ 43570811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctcttcctcatcactagAGCTGTCATCACTGCTGCTGGACTCTGCAGCTTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGAAGCAGGAGTCTTGGCTGCGGCTGTAGGTTTGGTGGTCTTCTTGGCTGCAGCGACCTCGTCCTCCGAGCTGTCGCTGTCAGAATCGGAGCTGCTCTCGGCTACGGCCTTGGTTGGGGCTAGTTTGTTCACCACGGGGGTGGCTGGTTTGGAGGCTGGTTTAGAGGCTGGTTTAGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGTGGCTGGGTTGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCctcatcttcagatgaagagtCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAGGCTGGTTTGGAAGCTGGTTTAGAGGCTGGTTTAGAAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCCTCATCTTCAGAAGAGTCGGAGTCCGAGCTGCTTTCTGCAGCAGCTGGTTTAACAACTGGGGAGGCTGGTTTGGAGGCTGGTTTAGTAACAGGGGCCGGGGTAGCCTTCTTAGCTGGAGCctcatcttcagatgaagagtCGGAGTCCGAGCTGCTTTCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCATGTTTCTTGGTAGCTGCAGCAGCCTTGGCTGGGACCTTGGGGGTCGCTGCAGGTTTCTTGGTAGCTGTGGCAGGTTTATTGGTAGCTGCTGCAGGTTTCTTGGTAGCTGTGGCAGGTTTCTTGGTAGCTGTGGCAGGTTTGGCAGGGGCCTCGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU1941085 lncRNA upstream 6787 43562580 ~ 43562865 (+) True G1696879
TU1941081 lncRNA upstream 15582 43553730 ~ 43554070 (+) True G1696876
TU1941005 lncRNA upstream 18458 43537157 ~ 43551194 (+) True G1696823
TU1941074 lncRNA upstream 72552 43496133 ~ 43497100 (+) True G1696871
TU1941071 lncRNA upstream 77080 43492364 ~ 43492572 (+) True G1696870
TU1941104 lncRNA downstream 13518 43584329 ~ 43584795 (+) True G1696892
TU1941111 lncRNA downstream 41057 43611868 ~ 43612229 (+) True G1696899
TU1941115 lncRNA downstream 50389 43621200 ~ 43621692 (+) True G1696903
TU1941129 lncRNA downstream 62498 43633309 ~ 43633743 (+) True G1696909
TU1941138 lncRNA downstream 94633 43665444 ~ 43665678 (+) True G1696913
XM_036955570.1 mRNA upstream 75471 43448714 ~ 43494181 (+) True LOC118942021
XM_036955569.1 mRNA upstream 166888 43371693 ~ 43402764 (+) True LOC110510394
XM_036956387.1 mRNA upstream 421283 43137388 ~ 43148369 (+) False LOC110499564
XM_036956406.1 mRNA downstream 27276 43598087 ~ 43614283 (+) False LOC110499505
XM_036956405.1 mRNA downstream 27277 43598088 ~ 43615698 (+) False LOC110499505
XM_021576651.2 mRNA downstream 406469 43977280 ~ 43987101 (+) True LOC110499517
XR_002469994.2 mRNA downstream 453208 44024019 ~ 44028357 (+) True LOC110499607
XM_021576648.2 mRNA downstream 463677 44034488 ~ 44055611 (+) False LOC110499515
TU1940662 other upstream 360134 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 431537 43137393 ~ 43138115 (+) True LOC110499564
TU1940630 other upstream 435639 43133627 ~ 43134013 (+) True G1696541
TU1940344 other upstream 789103 42779999 ~ 42780549 (+) True G1696324
TU1939742 other upstream 1043015 42522559 ~ 42526637 (+) False LOC118942073
TU1941117 other downstream 52673 43623484 ~ 43626360 (+) True G1696904
TU1941123 other downstream 55577 43626388 ~ 43661355 (+) True G1696905
TU1941142 other downstream 98753 43669564 ~ 43670353 (+) True G1696916
TU1941505 other downstream 296418 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 296418 43867229 ~ 43904858 (+) False G1697152

Expression Profile