RNA id: TU1941117


Basic Information

Item Value
RNA id TU1941117
length 1638
RNA type TUCP
GC content 0.39
exon number 2
gene id G1696904
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43623484 ~ 43626360 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGTAATGGTATCTGATTGATATAAATGTAATGGTATCTGATTGATATAAATGTAATGGTGTCTGATTGATATAAATGTAATGGTATCTGATTGATTGATATAAATGTAATGGTGTCTGATTGATATAAATGTAATGGTATCTGATTGATATAAATGTAATGGTGTCTGATTGAGTGATATAAATGTAATGGTGTCTGATTGATATAAATGTAATGGTATCTGATTGATATAAATGTAATGGTATCTGATTGATATAAATGTAATGGTGTCTGATTGATATAAATGTAATGGTGTCTGATTTATATAAATGTAATGGTATCTGATTGATATAAATGTAAGGGTGTCTGATTGATATAAATGTAATGGTGTCTGATTGAGTTGACATGTTGACTTTCAATCTCCACTACAGACAACATTAATGATGTTCTCGTTAAACTAGGAAATATCATTTATTACATAAAAAGTATATTTAGTTACAGGTTAAGAAGGCTAGATGCTTTATTCACAATGGGCAGTTTTACACAGTTAAATGAAAACaaatgtatgtctgtctgtctgtttttctagTAACAAAATGACAGGGGTTCAGGTCATAATCAAAAGCGTATTCCTTGTTTTCTCTTTGACCAGACAGCAATGTGGAGGAGGCAGACGCAGTTCTAGGTATATAGTCCTTTTGGGGGCTCCATCAAACGTCAGCTGTCTCCCACCCCCAGGGGAAAGAATGGACCAGTGGATGCACAACATGACATCTGATCTGAAGATAGCACACCGGCCTCTAAGAGCAGCCCTACTTCTAGCCAACCTCACCTCTGCATCACACAGTTCAAggtttaggagagagagagagagagagagagagagagagagagagagaacagtactcTGTAGTACTCAGTAGTACTTCAGTAGTACTTCAGTAGTACTTCAGTAGTACTTCAGGGTTCCACGGTCTGTGTTTCAGATGTCTTTTTCCGTTGGAAAGGATCCTAAAGGAGAGCAAAATGTTCGTCATCATcattgtcctcctcctcctcctcttcatcgtcatcctcctcctcctcatccttgtTTTCTATTCTTCTTAGTAGCTCTGTATTCCATAGTCAGCACTTCTGATCCAGTCAGCTATAGTTACTCCCACAGAGGGAAGCCCCATTAATTGAATATACCACCTTAGTGAGGACTTAACTCATCACccctgtgtgtgtctatatgcCTTGATCTGAACTCTCacagataaaaatatatatatacatactattTCAGGGATTGGAACCAAACATTcactgtttttttgtttgtttgtacttGCATAGTCCTGTAGCTTAGGTACAGCGATATGACACAGAGCTGTCGAGACATGAGACACACACCGACAGACGGAGTTCAACCAATCATTTTCTGTCCATTCATTTCGCACAACAACAGTGAAATGGTTCATCATTTCCTTGGAGAAGAGAAAGTGAATATACCTGTGCCTGTGTTTTGGTTTCTGTGGTCTCAgaaagtctgcatcccaaatggcaccctattccctatatagtacactactttagaccagggcccataggacccaaagtagtgcactactttagaccagggcccatagcatccaaagtagtgcactattttag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1941115 lncRNA upstream 1792 43621200 ~ 43621692 (+) True G1696903
TU1940982 lncRNA upstream 7784 43552789 ~ 43615700 (+) True LOC110499505
TU1941111 lncRNA upstream 11255 43611868 ~ 43612229 (+) True G1696899
TU1941104 lncRNA upstream 38689 43584329 ~ 43584795 (+) True G1696892
TU1941088 lncRNA upstream 52673 43569652 ~ 43570811 (+) False G1696882
TU1941129 lncRNA downstream 6949 43633309 ~ 43633743 (+) True G1696909
TU1941138 lncRNA downstream 39084 43665444 ~ 43665678 (+) True G1696913
TU1941139 lncRNA downstream 39742 43666102 ~ 43666576 (+) False G1696914
TU1941140 lncRNA downstream 39742 43666102 ~ 43712664 (+) True G1696914
TU1941149 lncRNA downstream 79903 43706263 ~ 43706633 (+) True G1696923
XM_036956405.1 mRNA upstream 7786 43598088 ~ 43615698 (+) False LOC110499505
XM_036956406.1 mRNA upstream 9201 43598087 ~ 43614283 (+) False LOC110499505
XM_036955570.1 mRNA upstream 129303 43448714 ~ 43494181 (+) True LOC118942021
XM_036955569.1 mRNA upstream 220720 43371693 ~ 43402764 (+) True LOC110510394
XM_036956387.1 mRNA upstream 475115 43137388 ~ 43148369 (+) False LOC110499564
XM_021576651.2 mRNA downstream 350920 43977280 ~ 43987101 (+) True LOC110499517
XR_002469994.2 mRNA downstream 397659 44024019 ~ 44028357 (+) True LOC110499607
XM_021576648.2 mRNA downstream 408128 44034488 ~ 44055611 (+) False LOC110499515
XM_036956410.1 mRNA downstream 408134 44034494 ~ 44055611 (+) True LOC110499515
XM_036955528.1 mRNA downstream 465040 44091400 ~ 44134492 (+) False capn2
TU1940662 other upstream 413966 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 485369 43137393 ~ 43138115 (+) True LOC110499564
TU1940630 other upstream 489471 43133627 ~ 43134013 (+) True G1696541
TU1940344 other upstream 842935 42779999 ~ 42780549 (+) True G1696324
TU1939722 other upstream 1096476 42522510 ~ 42527008 (+) False LOC118942073
TU1941123 other downstream 28 43626388 ~ 43661355 (+) True G1696905
TU1941142 other downstream 43204 43669564 ~ 43670353 (+) True G1696916
TU1941505 other downstream 240869 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 240869 43867229 ~ 43904858 (+) False G1697152
TU1941520 other downstream 240869 43867229 ~ 43904858 (+) False G1697152

Expression Profile