RNA id: TU1941123


Basic Information

Item Value
RNA id TU1941123
length 714
RNA type TUCP
GC content 0.40
exon number 6
gene id G1696905
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43626388 ~ 43661355 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gcactataaagggaatagggtgccatttgggatgcatcctcagAGTTTTTGAATACTTTTTGGCTTCTAGGGATAATAATCCTAACGTACTGTAGATAGAAATATAAAGTATTTGAACAATAAGCACAGACATCCTGCTGTGTTTGACAGTAATGATTGGAACAACAATATTCTGACAACGCAAGAAGTAGCATGAAGAACCTGACCAGAAAGCAGATGGTTAAAACACGTGTATAATGACAGAAGAAGATGaacaaagagaagaagaagaagaagaagacgaacaaagagaagaagaaagagaagaagacgaacaaagagaagaagaaagagaagaagatgaacaaagagaagaagaagaagaagaagaaagagaagaagacgaagaagaagatgaacaaagagaagaagaagatgaagaaggttgacagagagacagatagaaatcAAAGAGTGAAAGAGAATGACTAAAAGAGGTCAACAAACAGACaggtagagatggaaagagtgaaagagaatgACTAAAAGAGGTCAACAAACAGACAGagagacagagaggagagaggagagagagagagagagacagagagagagagagagaggagagagacagagagagcgagagagagagaggagagagagagaggagagagagagagagacagagaggagagagagagacagagagagagagagagagaggagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1941115 lncRNA upstream 4696 43621200 ~ 43621692 (+) True G1696903
TU1941111 lncRNA upstream 14159 43611868 ~ 43612229 (+) True G1696899
TU1941104 lncRNA upstream 41593 43584329 ~ 43584795 (+) True G1696892
TU1941092 lncRNA upstream 55577 43569652 ~ 43570811 (+) False G1696882
TU1941138 lncRNA downstream 4089 43665444 ~ 43665678 (+) True G1696913
TU1941139 lncRNA downstream 4747 43666102 ~ 43666576 (+) False G1696914
TU1941140 lncRNA downstream 4747 43666102 ~ 43712664 (+) True G1696914
TU1941149 lncRNA downstream 44908 43706263 ~ 43706633 (+) True G1696923
TU1941153 lncRNA downstream 55072 43716427 ~ 43716719 (+) True G1696927
XM_036956405.1 mRNA upstream 10690 43598088 ~ 43615698 (+) False LOC110499505
XM_036956406.1 mRNA upstream 12105 43598087 ~ 43614283 (+) False LOC110499505
XM_036955570.1 mRNA upstream 132207 43448714 ~ 43494181 (+) True LOC118942021
XM_036955569.1 mRNA upstream 223624 43371693 ~ 43402764 (+) True LOC110510394
XM_036956386.1 mRNA upstream 478019 43137389 ~ 43148369 (+) False LOC110499564
XM_021576651.2 mRNA downstream 315925 43977280 ~ 43987101 (+) True LOC110499517
XR_002469994.2 mRNA downstream 362664 44024019 ~ 44028357 (+) True LOC110499607
XM_021576648.2 mRNA downstream 373133 44034488 ~ 44055611 (+) False LOC110499515
XM_036956410.1 mRNA downstream 373139 44034494 ~ 44055611 (+) True LOC110499515
XM_036955528.1 mRNA downstream 430045 44091400 ~ 44134492 (+) False capn2
TU1941117 other upstream 28 43623484 ~ 43626360 (+) True G1696904
TU1940662 other upstream 416870 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 488273 43137393 ~ 43138115 (+) True LOC110499564
TU1940630 other upstream 492375 43133627 ~ 43134013 (+) True G1696541
TU1940344 other upstream 845839 42779999 ~ 42780549 (+) True G1696324
TU1941142 other downstream 8209 43669564 ~ 43670353 (+) True G1696916
TU1941505 other downstream 205874 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 205874 43867229 ~ 43904858 (+) False G1697152
TU1941520 other downstream 205874 43867229 ~ 43904858 (+) False G1697152
TU1941517 other downstream 229856 43891211 ~ 43900052 (+) False G1697152

Expression Profile