RNA id: TU1941149


Basic Information

Item Value
RNA id TU1941149
length 242
lncRNA type intronic
GC content 0.49
exon number 2
gene id G1696923
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43706263 ~ 43706633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtcatgtgtcttctcagtcatgttgacactggtctactaccaggtcatgtgtcttctcagtcaggttgagactggtctactaccaggtcatgtgtcttctcagtcaggttgagactgctctactaccaggtcatgtgtcttctcagtcaggttgagcgtggtctactaccaggtcatgtgtcttctcagtcaggttgagcgtggtctactaccaggtcatgtgtcttctcagtcaggttgag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1941139 lncRNA upstream 39687 43666102 ~ 43666576 (+) False G1696914
TU1941138 lncRNA upstream 40585 43665444 ~ 43665678 (+) True G1696913
TU1941129 lncRNA upstream 72520 43633309 ~ 43633743 (+) True G1696909
TU1941115 lncRNA upstream 84571 43621200 ~ 43621692 (+) True G1696903
TU1941111 lncRNA upstream 94034 43611868 ~ 43612229 (+) True G1696899
TU1941153 lncRNA downstream 9794 43716427 ~ 43716719 (+) True G1696927
TU1941157 lncRNA downstream 22791 43729424 ~ 43729739 (+) True G1696931
TU1941162 lncRNA downstream 29684 43736317 ~ 43738691 (+) True G1696936
TU1941167 lncRNA downstream 52744 43759377 ~ 43759690 (+) True G1696941
TU1941168 lncRNA downstream 54220 43760853 ~ 43761195 (+) False G1696942
XM_036956405.1 mRNA upstream 90565 43598088 ~ 43615698 (+) False LOC110499505
XM_036956406.1 mRNA upstream 91980 43598087 ~ 43614283 (+) False LOC110499505
XM_036955570.1 mRNA upstream 212082 43448714 ~ 43494181 (+) True LOC118942021
XM_036955569.1 mRNA upstream 303499 43371693 ~ 43402764 (+) True LOC110510394
XM_036956386.1 mRNA upstream 557894 43137389 ~ 43148369 (+) False LOC110499564
XM_021576651.2 mRNA downstream 270647 43977280 ~ 43987101 (+) True LOC110499517
XR_002469994.2 mRNA downstream 317386 44024019 ~ 44028357 (+) True LOC110499607
XM_021576648.2 mRNA downstream 327855 44034488 ~ 44055611 (+) False LOC110499515
XM_036956410.1 mRNA downstream 327861 44034494 ~ 44055611 (+) True LOC110499515
XM_036955528.1 mRNA downstream 384767 44091400 ~ 44134492 (+) False capn2
TU1941142 other upstream 35910 43669564 ~ 43670353 (+) True G1696916
TU1941123 other upstream 44908 43626388 ~ 43661355 (+) True G1696905
TU1941117 other upstream 79903 43623484 ~ 43626360 (+) True G1696904
TU1940662 other upstream 496745 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 568148 43137393 ~ 43138115 (+) True LOC110499564
TU1941505 other downstream 160596 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 160596 43867229 ~ 43904858 (+) False G1697152
TU1941520 other downstream 160596 43867229 ~ 43904858 (+) False G1697152
TU1941517 other downstream 184578 43891211 ~ 43900052 (+) False G1697152
TU1941646 other downstream 524689 44231322 ~ 44231767 (+) True G1697222

Expression Profile