RNA id: TU1941162


Basic Information

Item Value
RNA id TU1941162
length 281
lncRNA type intronic
GC content 0.42
exon number 3
gene id G1696936
representative True

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 43736317 ~ 43738691 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtagacaggtagacatgtagacatgtacacaggtagacatgtacacaggtagacaggtagacatgtacacaggtagacatgtagagaggtagacaggtagacatgtacacaggtagacaggtagacatgtacacaggtagtcatttagacatgtagacatgtacacaggtagacatttagacaggtagacatgtacacaggtagacatgtagataTGTACACAGGTAGATatgtagacatgtacacaggtagatatgtagacatgtacacaggtagacatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1941157 lncRNA upstream 6578 43729424 ~ 43729739 (+) True G1696931
TU1941153 lncRNA upstream 19598 43716427 ~ 43716719 (+) True G1696927
TU1941140 lncRNA upstream 23653 43666102 ~ 43712664 (+) True G1696914
TU1941149 lncRNA upstream 29684 43706263 ~ 43706633 (+) True G1696923
TU1941139 lncRNA upstream 69741 43666102 ~ 43666576 (+) False G1696914
TU1941167 lncRNA downstream 20686 43759377 ~ 43759690 (+) True G1696941
TU1941168 lncRNA downstream 22162 43760853 ~ 43761195 (+) False G1696942
TU1941169 lncRNA downstream 22162 43760853 ~ 43764322 (+) True G1696942
TU1941176 lncRNA downstream 54466 43793157 ~ 43793370 (+) True G1696948
TU1941190 lncRNA downstream 86206 43824897 ~ 43825120 (+) True G1696959
XM_036956405.1 mRNA upstream 120619 43598088 ~ 43615698 (+) False LOC110499505
XM_036956406.1 mRNA upstream 122034 43598087 ~ 43614283 (+) False LOC110499505
XM_036955570.1 mRNA upstream 242136 43448714 ~ 43494181 (+) True LOC118942021
XM_036955569.1 mRNA upstream 333553 43371693 ~ 43402764 (+) True LOC110510394
XM_036956386.1 mRNA upstream 587948 43137389 ~ 43148369 (+) False LOC110499564
XM_021576651.2 mRNA downstream 238589 43977280 ~ 43987101 (+) True LOC110499517
XR_002469994.2 mRNA downstream 285328 44024019 ~ 44028357 (+) True LOC110499607
XM_021576648.2 mRNA downstream 295797 44034488 ~ 44055611 (+) False LOC110499515
XM_036956410.1 mRNA downstream 295803 44034494 ~ 44055611 (+) True LOC110499515
XM_036955528.1 mRNA downstream 352709 44091400 ~ 44134492 (+) False capn2
TU1941142 other upstream 65964 43669564 ~ 43670353 (+) True G1696916
TU1941123 other upstream 74962 43626388 ~ 43661355 (+) True G1696905
TU1941117 other upstream 109957 43623484 ~ 43626360 (+) True G1696904
TU1940662 other upstream 526799 43207559 ~ 43209518 (+) True G1696563
TU1940489 other upstream 598202 43137393 ~ 43138115 (+) True LOC110499564
TU1941505 other downstream 128538 43867229 ~ 43886750 (+) False G1697152
TU1941512 other downstream 128538 43867229 ~ 43904858 (+) False G1697152
TU1941520 other downstream 128538 43867229 ~ 43904858 (+) False G1697152
TU1941517 other downstream 152520 43891211 ~ 43900052 (+) False G1697152
TU1941646 other downstream 492631 44231322 ~ 44231767 (+) True G1697222

Expression Profile